Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0261 ATGATGCCCCTTAAGAGAAAAAAATGGACTGAGGCTGAGGAGAAAACCCTAATTGACAAGTACGGTGAGATGGTGTCAGATGGTACTCTTTCGAGGATGAAAACCCGTGAGAAAAAATTCAAACCCGTTGCTTTTTATGTGAATTCTGTTCACCATTTTAGAGATCACTCGGCTTTTCCATGGCAATGGACTTGGAAAGATGTTTCTACCAAAGTCCAGAACATGAGGCATCAGTACTTGCTTGTCAAGCAGAAGATCAAGAAATCCGAATCATCGGCTGTTGAGAATTCGGATGGAGACTCGAACAATCCGGAAGAGTACGATTGGATTGAGGGAGTCACTCATTGGTCTAATTTCTTGAGGTACAAGGATGTTTTCGGGGATTTAACGGCTGCCTGTAGTAATCATAGTAATGAGCTTATGGCTGTTTCGAATGGTGGTTTGTTTCATACGGATGTTATGGAGTTTTCTCATATCGGTCATTCTGAGGAAGGGGATTTTTCTGTGGGTATTGAGAATGGAGTAATGGGGTTTGATTATGATGGAGATGAGTGTGAGAATAACGATAATGGTAATGGTACTGACAAAATGAAGGGTGAAGGGTCAAACTTGATAATGAAGAAGAGGAAGAAGATGAAGAAGAAGAAGAAGAAAAGAAAAATGGCGAAGGGCTTGGAGGCAAAACCATGGAATCTTGTGAAAAAGCAGCTCGTAAAGTTAAAGGACATGGAGGCTCGGTTTGAGAAGTACGAGGTGGAGAGAGAGCGGGAGAGGCAAATGAGAGAGAGTTTAAGAATGGAAATGGAGTGGAAGTGGGAGAAGAAAATGGAGGAGTGGGAAAAGGAGAGGGTAGAGAAGGAAAAAGCTATGGAGTTATTGAGAAAACAGAGGGTTCAAGATTGGGAAGCATTGGAGGAGAGTCAAGAAATGGAAAGAAGGAGAAGAAGAGAGGAAGAGTTAAATTGTGAAAGGGAATGGGAAGACCGGATGAATAAGAGAAGGTTAGAATGGAAGAAGAGGATCGATGAGACGTTGGGCAGGCACCAAGAAGAAACGGGTCAGATACAGGCCCGAATCATTCACGAGCAGCAGAACCTTACGGGCCAGTTGCTCGGGTTCGTTTCGCAGTGGACAGCCCATCAAGCTGGAATCTCTGATCATGCTAGTAGTCCCACTACCAACCATTACATTTCTCATATGATGCAAAATTTGCATCATGTGAATGGTACGGTTCATAGTGACTCTAGAGTTGAAGGAGAAAATCAAGATGACCATTTCATTGTTGGTTGA 1290 43.02 MMPLKRKKWTEAEEKTLIDKYGEMVSDGTLSRMKTREKKFKPVAFYVNSVHHFRDHSAFPWQWTWKDVSTKVQNMRHQYLLVKQKIKKSESSAVENSDGDSNNPEEYDWIEGVTHWSNFLRYKDVFGDLTAACSNHSNELMAVSNGGLFHTDVMEFSHIGHSEEGDFSVGIENGVMGFDYDGDECENNDNGNGTDKMKGEGSNLIMKKRKKMKKKKKKRKMAKGLEAKPWNLVKKQLVKLKDMEARFEKYEVERERERQMRESLRMEMEWKWEKKMEEWEKERVEKEKAMELLRKQRVQDWEALEESQEMERRRRREEELNCEREWEDRMNKRRLEWKKRIDETLGRHQEETGQIQARIIHEQQNLTGQLLGFVSQWTAHQAGISDHASSPTTNHYISHMMQNLHHVNGTVHSDSRVEGENQDDHFIVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1222656 1224661 - Conep15aG0026700.1 Cone15ag0261 453389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0261 429 Coils Coil 233 267 - -
Cone15ag0261 429 Coils Coil 276 296 - -
Cone15ag0261 429 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE-RELATED 5 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0261 Cone-Chr15:1222656 Cone18ag1200 Cone-Chr18:8558809 4.61E-45 dispersed
Cone14ag0243 Cone-Chr14:1113521 Cone15ag0261 Cone-Chr15:1222656 1.67E-211 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g941 . Blo12g00106 Bda03g01136 . Bpe04g01079 . Bma04g01165 . . Cmo17g00090 . . . . . . . . . . . . . . Cla06g00780 Cam06g0834 Cec06g0849 Cco06g0859 Clacu06g0837 Cmu06g0808 Cre06g1589 Cone14ag0243 Cone15ag0261 . . . Csa02g00901 . . . . . . . . . . . . . . Cma17g00083 . Car17g00078 Cpe12g00077 . . . . . . . . . . . . . . . Lsi09g01119 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008410 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 35