Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0302 ATGGCGGAATTTCTAGATATAGAAGCTCAAGACGGAGTACGAATGCCATGGAACGTGGTGCCAGGTACGAAGCAAGAAGTTGCTAACTGTGTAGTTCCTGTTTCCGCCATTTACACGCCGATCAAACCTTTCCCCAACACGCCTGTTTTGCCTTACGCTCCTCTTCGCTGTCGCACCTGCCGTTCGATCCTCAATCCTTTTTCTATAGTCGATTACGCCGCCAAGATCTGGATCTGTCCTTTCTGCTTTCAGCGCAATCACTTTCCTCCTCACTATGCGTCCATTACCGACGATAATCTTCCCGCGGAGCTCTTCCCGCAATACACTACCATCGAGTATGAGACTCCCGGAGAGAATTCTTCCTCTGTGCCTCCGGTATTCTTGTTCATCGTCGATACCTGTATAATTGAGGAGGAGATGGCGTTTTTGAAGTCTGCCTTGTCTCAGGCTATTGGTTTGTTGCCTGATAATTCGCTGGTGGGGCTTATCACCTTCGGGAATTTCGTTCACGTTCATGAATTAGGGTTCGGTCAGATCGCCAAGACTTATGTGTTCAAGGGATCCAAGGATGTGTCCAAGGAGCAACTTCTGGAGCAGATGAACTTCTTCGTCCAGAAGCCCAAGCCTCCTACTGGTGTCATTGCTGGTGCTAGGGACGGACTTTCAACTGAGAGCATTTCACGCTTTTTGGTGCCAAAGTCCGAGTGCGAGTTTACCCTCAATTCAGTTTTGGAGGAGTTACAGAAAGATCCTTGGGGAGTGCCAGCAGATCAGCGAGCCAGTAGGTGCACAAGTACTGCATTGAGCATTGCTGCTAGTTTGCTTGGAGCCTGTGTTCCTGGTTCTGGAGCTAGAATCATGGCATTTGTTGGAGGGCCAGCCACTGAAGGACCTGGTGCGATTGTGTCTAAAGATCTATCTGAACCAATTCGATCTCACAAGGACCTCGATAAAGATTCTGCCCCCCTCTATCATAAAGCTGTGAAGTTCTACGAGGGACTCTCCAAGCAGCTTGTTCATCAAGGACATGTACTTGATCTTTTCGCTTGTGCTCTTGACCAGGTGGGTGTTGCTGAACTGAAAGTTGCAGTTGAAAAAACTGGAGGGCTAGTTGTCCTTGCAGAAAGTTTCGGACACTCTGTTTTCAAGGATTCAGTTAAACGTGTTTTCCAGTCTGGTGAATATGATCTTGGTCTATCCTCAAATGGTATATTTGAGGTAAACTGTTCAAAGGATATCAAAATCCAGGGAGTCATTGGTCCTTGTGCTTCTCTTGAAAAGAAAGGTCCCTTGTGTTCTGACACTGTGGTAGGTCAGGGAGGTACAACTGCATGGAAGATGTGTGGTCTTGATCAAGCTACATCTTTATGTCTAATATTTGAAGTTGTTAAGAAGGAGAGTCCAGAGGCTCCTGTTCAATCCACTAGCAATCAATTTTATTTCCAATTTCTTACTTATTATCAGAATACCTATGGTCAGATGAGACTCCGAGTTACAACCCTTTCTAGAAGATGGGTTGCTGGACCTGGAAGCATACAGGACCTGACTGCTGGGTTTGACCAAGAAGCTGCTGCAGTGGTCATGGCACGTCTAGTATCCTTTAAAATGGAAACTGAGGCTGAGTTTGATCCCATTAGATGGCTGGACAAAGCTTTAATACATCTCTGTTCTCGGTATGGAGATTATCAAAAGGAGTCTCCATCTTCTTTCAGCCTATCTCCAAGGCTTTCAATCTTCCCTCAGTTCATGTTCAATCTACGACGATCACAATTCGTGCAGGTGTTTAACAACAGCCCAGATGAGACAGCCTACTTCAGAATGATCCTGAACCGGGAAAACGTCGTTAATTCTGTCGTGATGATACAACCTTCATTGGTGTCCTACACATTTCACTCAGGCTCAGAACCAGCTCTCCTAGACGTGGCTGCAATTGCAGCTGACAGGATTCTTCTTCTGGATTCATATTTCACTGTTGTTATTTTCCATGGTTCAACTATTGCTCAGTGGCGAAAAGCTGGATATCATAATCAGCCTGAGCATCAGGCATTCGCTCAATTGCTTCAAGCTCCTCATGACGAGGCGGACTCGATAATTAAGCAAAGGTTCCCAGTTCCTCGTCTAGTAATCTGTGATCAGCATGGTTCACAGGCACGTTTTCTTCTGGCTAAGTTGAATCCATCTGCTACATACAACTCGGATGCTTCTCTCCCGGGTGGAGACGTCATTTTTACAGATGATGTCAGCTTCGAGGTCTTCTTAGATCATCTTCAGAGATTAGCAGTTCAGTAA 2289 45.92 MAEFLDIEAQDGVRMPWNVVPGTKQEVANCVVPVSAIYTPIKPFPNTPVLPYAPLRCRTCRSILNPFSIVDYAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYETPGENSSSVPPVFLFIVDTCIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGNFVHVHELGFGQIAKTYVFKGSKDVSKEQLLEQMNFFVQKPKPPTGVIAGARDGLSTESISRFLVPKSECEFTLNSVLEELQKDPWGVPADQRASRCTSTALSIAASLLGACVPGSGARIMAFVGGPATEGPGAIVSKDLSEPIRSHKDLDKDSAPLYHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLAESFGHSVFKDSVKRVFQSGEYDLGLSSNGIFEVNCSKDIKIQGVIGPCASLEKKGPLCSDTVVGQGGTTAWKMCGLDQATSLCLIFEVVKKESPEAPVQSTSNQFYFQFLTYYQNTYGQMRLRVTTLSRRWVAGPGSIQDLTAGFDQEAAAVVMARLVSFKMETEAEFDPIRWLDKALIHLCSRYGDYQKESPSSFSLSPRLSIFPQFMFNLRRSQFVQVFNNSPDETAYFRMILNRENVVNSVVMIQPSLVSYTFHSGSEPALLDVAAIAADRILLLDSYFTVVIFHGSTIAQWRKAGYHNQPEHQAFAQLLQAPHDEADSIIKQRFPVPRLVICDQHGSQARFLLAKLNPSATYNSDASLPGGDVIFTDDVSFEVFLDHLQRLAVQ 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1409536 1414622 - Conep15aG0030800.1 Cone15ag0302 453430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0302 762 CDD Sec23_C 612 732 IPR037550 GO:0030127(InterPro)|GO:0090114(InterPro)
Cone15ag0302 762 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cone15ag0302 762 FunFam Protein transport protein SEC23 622 726 - -
Cone15ag0302 762 FunFam Protein transport protein SEC23 517 644 - -
Cone15ag0302 762 Pfam Sec23/Sec24 helical domain 520 618 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone15ag0302 762 Gene3D Severin 622 726 IPR029006 -
Cone15ag0302 762 FunFam Protein transport protein SEC23 124 400 - -
Cone15ag0302 762 SUPERFAMILY Zn-finger domain of Sec23/24 45 118 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Cone15ag0302 762 SUPERFAMILY vWA-like 123 391 IPR036465 -
Cone15ag0302 762 Gene3D Sec23/Sec24 helical domain 517 760 - -
Cone15ag0302 762 SUPERFAMILY Helical domain of Sec23/24 520 622 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone15ag0302 762 FunFam Protein transport protein SEC23 51 110 - -
Cone15ag0302 762 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 5 762 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Cone15ag0302 762 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Cone15ag0302 762 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 623 762 IPR036180 -
Cone15ag0302 762 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Cone15ag0302 762 Pfam Gelsolin repeat 635 720 IPR007123 -
Cone15ag0302 762 Gene3D - 7 503 - -
Cone15ag0302 762 Pfam Sec23/Sec24 beta-sandwich domain 401 506 IPR012990 -
Cone15ag0302 762 SUPERFAMILY beta-sandwich domain of Sec23/24 4 519 - -
Cone15ag0302 762 Gene3D - 51 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0302 K14006 - - csv:101211017 1369.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0547 Cone-Chr14:2716876 Cone15ag0302 Cone-Chr15:1409536 0 dispersed
Cone15ag0302 Cone-Chr15:1409536 Cone15ag0568 Cone-Chr15:2851889 0 dispersed
Cone14ag0282 Cone-Chr14:1293089 Cone15ag0302 Cone-Chr15:1409536 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g890 . . . . . . . . . . Cma06g01250 Cma14g01886 Car06g01074 Car14g01689 Sed02g1485 Cpe08g00393 Cpe03g01585 Bhi01g00041 Tan10g0534 Cmetu06g0221 . . . Lcy11g1765 . . . . . . . . Cone15ag0302 . . Lsi05g01829 . . Cme06g00391 . . . Bda13g00497 . . . . . Cmo06g01261 Cmo14g01936 . . . . . . . . . . . . . Cla05g00356 Cam05g0388 Cec05g0393 Cco05g0392 Clacu05g0383 Cmu05g0368 Cre05g0431 . Csa03g01107 Chy06g00377 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011146 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31