Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0335 ATGGACGGCCGATCTCTCCCCCCTCACTTCCTCTCTAAAGACCTCCAGCTCCACCCCGGCCACCACCAATTCTTCCACCACCACCATCAACAGCGACAAAACTCCGAAGAAGATGACCATGGTCAACAACAACAAAACCGCCGCCAAAACCGAGATCGAGAAGAAGAAGAAGAAAACGGTCAAAACATGAACCTCATGATCAACAACACAACAGATCAATTAGCAGGCAGTACAACAAGTACTGGAGGAGGAGGAGGAGATCATGATCATGATCATCATAATCAGTCTGATCAAATCACAAGAAGGCCCAGAGGGAGGCCCGCTGGGTCGAAAAACAAGCCCAAACCACCGATCATCATAACCAGAGACAGCGCAAATGCACTCCGGTCCCATGTAATGGAAATCGCAACTGGCTGTGACATCATCGAGAGTGTTACGGTCTTTGCTCGGAGAAGGCAAAGAGGAGTTAGTATATTGAGCGGAAGCGGAACCGTCACTAACGTTACTCTAAAACAACCTGCTTCAGTAGGTGCAATTGTCACTTTACATGGTAGATTCGAGATTTTATCGCTTTCCGGATCGTTTTTGCCCCCTCCAGCCCCACCCGCAGCTTCTGGTTTGACTATATATTTGGCTGGTGGACAAGGTCAGGTGGTCGGAGGGAGTGTGGTGGGCCCGCTTTTGGCGTCGGGGCCAGTGGTTATCATGGCAGCTTCTTTTGGTAATGCAGCGTATGAAAGATTGCCGCTAGTTGAGGATGAGGAGGTTGCAGAAGGGGTTCCGGAAAGTACTACTCGGCCTATCGGGTCGCCCGGAGTTGTTGGATCGGGCCCACAACAGCAGCAGCAGCAACAGCAACAATTTATGACGGATCATACCACATCACCTTTGTTTCATGGGATGCCGCAAAATCTTCTAAATTCATGTCAATTTCCTAATGACGGTTACTGGGGAGGAATAGGCCGTCCAGCTTTCTGA 978 49.9 MDGRSLPPHFLSKDLQLHPGHHQFFHHHHQQRQNSEEDDHGQQQQNRRQNRDREEEEENGQNMNLMINNTTDQLAGSTTSTGGGGGDHDHDHHNQSDQITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIATGCDIIESVTVFARRRQRGVSILSGSGTVTNVTLKQPASVGAIVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLVEDEEVAEGVPESTTRPIGSPGVVGSGPQQQQQQQQQFMTDHTTSPLFHGMPQNLLNSCQFPNDGYWGGIGRPAF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1556311 1557288 + Conep15aG0034200.1 Cone15ag0335 453463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0335 325 MobiDBLite consensus disorder prediction 85 100 - -
Cone15ag0335 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 250 - -
Cone15ag0335 325 MobiDBLite consensus disorder prediction 29 59 - -
Cone15ag0335 325 ProSiteProfiles PPC domain profile profile. 125 264 IPR005175 -
Cone15ag0335 325 FunFam AT-hook motif nuclear-localized protein 128 255 - -
Cone15ag0335 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 57 314 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone15ag0335 325 MobiDBLite consensus disorder prediction 259 286 - -
Cone15ag0335 325 PIRSF ESCAROLA 12 323 IPR014476 GO:0003680(InterPro)
Cone15ag0335 325 MobiDBLite consensus disorder prediction 73 119 - -
Cone15ag0335 325 CDD DUF296 129 196 IPR005175 -
Cone15ag0335 325 MobiDBLite consensus disorder prediction 25 59 - -
Cone15ag0335 325 Gene3D - 128 256 - -
Cone15ag0335 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 240 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0309 Cone-Chr14:1438102 Cone15ag0335 Cone-Chr15:1556311 1.26E-160 dispersed
Cone15ag0335 Cone-Chr15:1556311 Cone8ag0353 Cone-Chr8:2019529 7.98E-99 dispersed
Cone15ag0333 Cone-Chr15:1527904 Cone15ag0335 Cone-Chr15:1556311 1.30E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0335 - - - 0.0