Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0346 ATGGTAAGAGGGAAGACGCAGATGAGGCGAATAGAGAATGCGACAAGTCGGCAGGTTACATTTTCAAAGAGGAGAAATGGGCTGTTGAAGAAGGCGTTCGAGCTCTCTGTTCTATGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGCAAGCTGTACGAGTTTGGTAGCTCCAGCATGCAGGCAACAATCGAACGTTACGAAAGCTATAAAAAAGACGCTCCGACAAACAACGCATTGGTGGAACAAAATATGCAGCACCTAAAGCATGAAGCAGCTCAGATGATGAAGGAGATAGAGCTGCTTGAAACTTCAAAACGGAAAATGATGGGAGAAAATTTGAGTTCATGCTCCCTTGAAGAACTTCAACAGATCGAGCAACGCTTAGAGAAGAGCGTCGGCATCGTTAGAGCAAGAAAGACCCAGGTTTTCAAGGAACAAATTGAACTACTAAAACTAAAGGAGAAAAACCTACTAGAAGAAAACGCAAAGCTATCTGAGAAGTTTGGTGGTGATCCGGGACAGAAGGAAGGATCAAAAGGATCAGATACAGATAGAGGAGCAGCAGATCTGAAAAGAAGCCCAGTTTCAGATGTGGAAACCGAATTGCTCATTGGGCCCCCAGAAGCTAAGCCCAAACGTTATCCTTCGTAA 660 44.55 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFGSSSMQATIERYESYKKDAPTNNALVEQNMQHLKHEAAQMMKEIELLETSKRKMMGENLSSCSLEELQQIEQRLEKSVGIVRARKTQVFKEQIELLKLKEKNLLEENAKLSEKFGGDPGQKEGSKGSDTDRGAADLKRSPVSDVETELLIGPPEAKPKRYPS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1607150 1611363 - Conep15aG0035300.1 Cone15ag0346 453474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0346 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone15ag0346 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone15ag0346 219 Pfam K-box region 85 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone15ag0346 219 Coils Coil 150 170 - -
Cone15ag0346 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 MobiDBLite consensus disorder prediction 166 219 - -
Cone15ag0346 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 MobiDBLite consensus disorder prediction 166 199 - -
Cone15ag0346 219 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone15ag0346 219 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 Coils Coil 80 107 - -
Cone15ag0346 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0346 219 FunFam MADS-box protein SOC1 14 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0371 Cone-Chr11:1820746 Cone15ag0346 Cone-Chr15:1607150 1.34E-71 dispersed
Cone15ag0346 Cone-Chr15:1607150 Cone6ag0933 Cone-Chr6:4798470 1.03E-41 dispersed
Cone14ag0123 Cone-Chr14:568720 Cone15ag0346 Cone-Chr15:1607150 3.33E-63 wgd
Cone15ag0131 Cone-Chr15:606443 Cone15ag0346 Cone-Chr15:1607150 3.09E-61 wgd
Cone15ag0346 Cone-Chr15:1607150 Cone18ag1119 Cone-Chr18:8126848 5.77E-71 wgd
Cone15ag0346 Cone-Chr15:1607150 Cone8ag0337 Cone-Chr8:1930592 1.74E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44831 PF01214 CK_II_beta 3.80E-80 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0346 - - - 0.0