Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone15ag0348 | ATGGCGAATCTTCAGAGAGGAGAACTCGAAAAAGACGAAGAGACGCGAGCCGTTGCCGTGAGAACAAACGGCCGAGATGAAAACCTGCTTAGAACCGGGTCCGGAAAGGATAAGGATCCGGGACCGAGCAAAGCTCTCGCTTTAGCTCTAAAAGAAGAAGTGGAAGACCCGATCACGGCAATTCAGGTCGTGTCGGCTGCGGTAGCTCAGCCTGCGAAGAGAGCAACGACTAAGGACCGCCACACGAAAGTGGAGGGTCGTGGTCGGAGGATCCGAATGCCCGCCACTTGCGCCGCCCGTATTTTCCAGCTGACCCGGGAACTCGGCCACAAGTCCGACGGAGAAACTATCAGATGGCTCCTCGAGCACGCCGAGCCGGCGATCATAGCCGCCACCGGTACCGGAACCATTCCCGCCATAGCCATGTCCGTTAACGGAACTCTTACTATCCCTACTACCCGACCCTCCGAACCGGAAACAAGCGACCCGTTAGCCAAGAAGAAGAGGAAAAAACCTGTTAACGGTGATCACGGGGACGTAAACGACGCCGTTACCGTGTCCGTCTCAAACGGTCTATCTACCACCACTACTGCTACCACTACCACACAGCAGCAACAAGGTTTACCACAGGGTTTAGTTCCTATGTGGGCCATACCTTCAAACGCCGTCGTTCCGGGGGCGTTCTTCATGTTCCCGCCGGTAGCTTCGATTGCCGGATCTTCAACCCAACCGCAGATATTTACATTTCCGGCAGCTTCGACTCCTCTTGTTAACATTTCGGCGAGACCTATTTCGTCTTTCATGTCATACCTACCTAACTCGACTACAACGAATTCGAATTCGAGTAATGCTACATCGACGTCGTCTAAATCTGATCAATCAGTCATGGCGCCGATTTCTTCTAGCTCCGGTAAGACGACGGCGAATAACAGCACAGCGACGACAACGCCTCAGCTGCTTAGAGATTTTTCTTTAGAGATTTACGATAAGCAAGAGCTTCAGTTCATGTCACGGTCCTCAAAACATTGA | 1029 | 52.58 | MANLQRGELEKDEETRAVAVRTNGRDENLLRTGSGKDKDPGPSKALALALKEEVEDPITAIQVVSAAVAQPAKRATTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAMSVNGTLTIPTTRPSEPETSDPLAKKKRKKPVNGDHGDVNDAVTVSVSNGLSTTTTATTTTQQQQGLPQGLVPMWAIPSNAVVPGAFFMFPPVASIAGSSTQPQIFTFPAASTPLVNISARPISSFMSYLPNSTTTNSNSSNATSTSSKSDQSVMAPISSSSGKTTANNSTATTTPQLLRDFSLEIYDKQELQFMSRSSKH | 342 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 1623578 | 1625294 | - | Conep15aG0035500.1 | Cone15ag0348 | 453476 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone15ag0348 | 342 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone15ag0348 | 342 | MobiDBLite | consensus disorder prediction | 149 | 182 | - | - | |
| Cone15ag0348 | 342 | MobiDBLite | consensus disorder prediction | 274 | 316 | - | - | |
| Cone15ag0348 | 342 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cone15ag0348 | 342 | Pfam | TCP family transcription factor | 76 | 164 | IPR017887 | - | |
| Cone15ag0348 | 342 | MobiDBLite | consensus disorder prediction | 160 | 177 | - | - | |
| Cone15ag0348 | 342 | ProSiteProfiles | TCP domain profile. | 77 | 131 | IPR017887 | - | |
| Cone15ag0348 | 342 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 71 | 287 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone15ag0348 | Cone-Chr15:1623578 | Cone9ag0744 | Cone-Chr9:3534491 | 2.27E-64 | dispersed | |
| Cone14ag0318 | Cone-Chr14:1501325 | Cone15ag0348 | Cone-Chr15:1623578 | 8.78E-166 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44832 | PF02493 | MORN | 2.60E-06 | CL0251 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone15ag0348 | - | - | - | 0.0 |