Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0348 ATGGCGAATCTTCAGAGAGGAGAACTCGAAAAAGACGAAGAGACGCGAGCCGTTGCCGTGAGAACAAACGGCCGAGATGAAAACCTGCTTAGAACCGGGTCCGGAAAGGATAAGGATCCGGGACCGAGCAAAGCTCTCGCTTTAGCTCTAAAAGAAGAAGTGGAAGACCCGATCACGGCAATTCAGGTCGTGTCGGCTGCGGTAGCTCAGCCTGCGAAGAGAGCAACGACTAAGGACCGCCACACGAAAGTGGAGGGTCGTGGTCGGAGGATCCGAATGCCCGCCACTTGCGCCGCCCGTATTTTCCAGCTGACCCGGGAACTCGGCCACAAGTCCGACGGAGAAACTATCAGATGGCTCCTCGAGCACGCCGAGCCGGCGATCATAGCCGCCACCGGTACCGGAACCATTCCCGCCATAGCCATGTCCGTTAACGGAACTCTTACTATCCCTACTACCCGACCCTCCGAACCGGAAACAAGCGACCCGTTAGCCAAGAAGAAGAGGAAAAAACCTGTTAACGGTGATCACGGGGACGTAAACGACGCCGTTACCGTGTCCGTCTCAAACGGTCTATCTACCACCACTACTGCTACCACTACCACACAGCAGCAACAAGGTTTACCACAGGGTTTAGTTCCTATGTGGGCCATACCTTCAAACGCCGTCGTTCCGGGGGCGTTCTTCATGTTCCCGCCGGTAGCTTCGATTGCCGGATCTTCAACCCAACCGCAGATATTTACATTTCCGGCAGCTTCGACTCCTCTTGTTAACATTTCGGCGAGACCTATTTCGTCTTTCATGTCATACCTACCTAACTCGACTACAACGAATTCGAATTCGAGTAATGCTACATCGACGTCGTCTAAATCTGATCAATCAGTCATGGCGCCGATTTCTTCTAGCTCCGGTAAGACGACGGCGAATAACAGCACAGCGACGACAACGCCTCAGCTGCTTAGAGATTTTTCTTTAGAGATTTACGATAAGCAAGAGCTTCAGTTCATGTCACGGTCCTCAAAACATTGA 1029 52.58 MANLQRGELEKDEETRAVAVRTNGRDENLLRTGSGKDKDPGPSKALALALKEEVEDPITAIQVVSAAVAQPAKRATTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAMSVNGTLTIPTTRPSEPETSDPLAKKKRKKPVNGDHGDVNDAVTVSVSNGLSTTTTATTTTQQQQGLPQGLVPMWAIPSNAVVPGAFFMFPPVASIAGSSTQPQIFTFPAASTPLVNISARPISSFMSYLPNSTTTNSNSSNATSTSSKSDQSVMAPISSSSGKTTANNSTATTTPQLLRDFSLEIYDKQELQFMSRSSKH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1623578 1625294 - Conep15aG0035500.1 Cone15ag0348 453476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0348 342 MobiDBLite consensus disorder prediction 1 21 - -
Cone15ag0348 342 MobiDBLite consensus disorder prediction 149 182 - -
Cone15ag0348 342 MobiDBLite consensus disorder prediction 274 316 - -
Cone15ag0348 342 MobiDBLite consensus disorder prediction 1 43 - -
Cone15ag0348 342 Pfam TCP family transcription factor 76 164 IPR017887 -
Cone15ag0348 342 MobiDBLite consensus disorder prediction 160 177 - -
Cone15ag0348 342 ProSiteProfiles TCP domain profile. 77 131 IPR017887 -
Cone15ag0348 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 71 287 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0348 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0348 Cone-Chr15:1623578 Cone9ag0744 Cone-Chr9:3534491 2.27E-64 dispersed
Cone14ag0318 Cone-Chr14:1501325 Cone15ag0348 Cone-Chr15:1623578 8.78E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44832 PF02493 MORN 2.60E-06 CL0251 Cone TF