Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0360 ATGAGTTTTGGCGGCAGTAATTATTTCCTTCAGAACAACAATAATTCCGGTGGTGGCGTGGCCCCAAGAACCGCCTCCGCCGCCGCCCATATGCTATCATCCTCTCAGTCTCTATCCGAATCCATGTTCAACTCTCCCGGACTCTTTCTCTCCCTTAGTGATCATATTATAGATGCGCAAGGAGATCAGACAGCTAGAATGTTATTAATGTCTGAAAATTTTGAGAGTAGTAGTAGTGGACATGGTGGGTTAAGGAAGAGCAGAGAAGAATTAGATCAAGAGCAAGCTGAGAGTACTAGATCTGGTAGTGACAACATGGACGGCGCCGGTTCCGGCGATGATAACGATCTTAACCGCTCCAGAAAGAAACGATACCGTAGACATACTCCTCAACAAATCCAAGAGCTAGAATCTTTGTTCAAGGAATGCCCTCATCCGGATGATAAGCAAAGACTGGAGTTAAGCAGAAGGCTTTGCTTGGAAACAAGACAAGTCAAGTTCTGGTTCCAAAACCGACGAACCCAGATGAAGACCCAATTGGAGCGGCATGAAAAAACATTGTTAAGGCAAGAGAATGACAAGCTAAGAGCTGAGAACATGTCAATCAGAGAAGCTATAAGAAACCCAATTTGTTCCAATTGTGGAGGTCCTGCAATTCTAGGTGAAATCTCACTCGAAGCGCAACATCTCAGGGTCGAGAATGCCCGACTAAAAGATGAATTGGAGCACGTTTGTGGGCTTGCCGGGAATTTTATGGGCCGCCTCGTTCCGTCCATGGATCACACTAATTCAATAATGACTTCCACGCCACCTTCATTGCCAACCTCATGTTTGGAACTTGGAGTTGGAAATAATGGTGGGGGTTTGACTATGGGTCTGACGATTCCGTATGTGGGGCACGAGTTTGGAGGCGGGTTGCCGAACAATTTGACTGGTACTATTGATCGGTCCGTTGAGAGGTCTATGTATTTGGAGCTTGCCTTAGCTGCTATGGATGAACTTGTTAAGATGTCTCAAACGGATGAACCACTTTGGATTAGAGGTTTAGAAGGTGCATCGAGTGGAAGAGAAGTTCTAAACCATGAAGAATATTCTAGAACATTCAGTAATTCTTGGTTTACAAGTAATGGGTTGATGAAACGTAATGTTAATTTTGTAATGGAAGGTTCTAGAGAGAATGGTATGGTTGTCATCGACAGCTTAACACTCGTCGAAACTTTGATGGATTCAAACCGTTGGGCGGAGATGTTTCCTTGTATGATTGCAAGAACTAGAACCATAGATGTCATCTCGAGCGGTATGGGAGGAACCCGGAACGGCGCGCTTCAATTGATGCACGCTGAGCTTCAAGTGCTATCGCCTTTGGTGCCAGTCCGGGAAGTGAACTTTCTTCGGTTCTGCAAACAACATGCTGAAGGGGTTTGGGCCGTGGTCGATGTGTCGCTCGACCATACTGCTCCCATGATCAGAGATCAAACCAATTATTGCAGGAGGCTTCCTTCTGGTTGTCTTGCGCAAGATATGCCCAATGGCTACTCAAAGGTGAGGTGGATAGAACATGCAGAATACGACGAAACGCAAGTCCACCGTCTGTACCGCCCATTGATCAGCTCCGGCATGGGGTTCGGCGCTCAACGGTGGGTCGCCACCCTCCAACGCCAATGTCAATGTCTTGCCATCCTCTTGTCCTCCGCCTCGCCCACAAGAGATCACACTTCACCAAAAACTGCCGCCGGGGGGCGGAGCATGCTGAAACTGGCGCAACGAATGACCAACAACTTCTGCGCCGGAGTAAGTGCGTCGACCGTCCATAAGTGGAATAAGCTCGTGAATTCCGGTGCAAGTATCGACCCGGACGTTCGGATTATGACGAGGAAGAGCGTTGATGATCCCGGCGAGCCGCCAGGTATTGTCCTCAGTGCTGCCACGTCAGTCTGGCTCCCTGTTTATCCGAAGAGATTGTTTGACTTTCTCCGTGATGAACGGCTTAGGAGCGAATGGGACATCCTATCCAACGGTGGTCCCATGCAGGAGATGGCTCACATTGCCAAAGGACAAGATCCTGGCAACTGCGTTTCTCTTCTACGTGCCAGCGACAAGAACAGAGTTTGA 2112 48.25 MSFGGSNYFLQNNNNSGGGVAPRTASAAAHMLSSSQSLSESMFNSPGLFLSLSDHIIDAQGDQTARMLLMSENFESSSSGHGGLRKSREELDQEQAESTRSGSDNMDGAGSGDDNDLNRSRKKRYRRHTPQQIQELESLFKECPHPDDKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHEKTLLRQENDKLRAENMSIREAIRNPICSNCGGPAILGEISLEAQHLRVENARLKDELEHVCGLAGNFMGRLVPSMDHTNSIMTSTPPSLPTSCLELGVGNNGGGLTMGLTIPYVGHEFGGGLPNNLTGTIDRSVERSMYLELALAAMDELVKMSQTDEPLWIRGLEGASSGREVLNHEEYSRTFSNSWFTSNGLMKRNVNFVMEGSRENGMVVIDSLTLVETLMDSNRWAEMFPCMIARTRTIDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSLDHTAPMIRDQTNYCRRLPSGCLAQDMPNGYSKVRWIEHAEYDETQVHRLYRPLISSGMGFGAQRWVATLQRQCQCLAILLSSASPTRDHTSPKTAAGGRSMLKLAQRMTNNFCAGVSASTVHKWNKLVNSGASIDPDVRIMTRKSVDDPGEPPGIVLSAATSVWLPVYPKRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDPGNCVSLLRASDKNRV 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1665508 1670024 + Conep15aG0036800.1 Cone15ag0360 453488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0360 703 SUPERFAMILY Bet v1-like 318 557 - -
Cone15ag0360 703 SUPERFAMILY Bet v1-like 579 696 - -
Cone15ag0360 703 Coils Coil 173 205 - -
Cone15ag0360 703 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 102 699 IPR042160 -
Cone15ag0360 703 CDD homeodomain 122 179 IPR001356 GO:0003677(InterPro)
Cone15ag0360 703 CDD START_ArGLABRA2_like 320 556 - -
Cone15ag0360 703 MobiDBLite consensus disorder prediction 74 130 - -
Cone15ag0360 703 Pfam START domain 325 557 IPR002913 GO:0008289(InterPro)
Cone15ag0360 703 FunFam Homeobox-leucine zipper protein GLABRA 2 325 556 - -
Cone15ag0360 703 SUPERFAMILY Homeodomain-like 105 179 IPR009057 -
Cone15ag0360 703 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone15ag0360 703 Gene3D - 110 195 - -
Cone15ag0360 703 FunFam Homeobox-leucine zipper protein HDG1 109 195 - -
Cone15ag0360 703 SMART START_1 325 557 IPR002913 GO:0008289(InterPro)
Cone15ag0360 703 Coils Coil 220 240 - -
Cone15ag0360 703 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677(InterPro)
Cone15ag0360 703 SMART HOX_1 120 183 IPR001356 GO:0003677(InterPro)
Cone15ag0360 703 MobiDBLite consensus disorder prediction 82 97 - -
Cone15ag0360 703 ProSiteProfiles START domain profile. 316 560 IPR002913 GO:0008289(InterPro)
Cone15ag0360 703 Pfam Homeodomain 122 177 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0360 Cone-Chr15:1665508 Cone8ag1442 Cone-Chr8:11179665 8.33E-201 dispersed
Cone11ag0406 Cone-Chr11:2008083 Cone15ag0360 Cone-Chr15:1665508 3.38E-295 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone15ag0360 Cone-Chr15:1665508 0 wgd
Cone14ag0104 Cone-Chr14:484646 Cone15ag0360 Cone-Chr15:1665508 1.40E-221 wgd
Cone15ag0108 Cone-Chr15:520933 Cone15ag0360 Cone-Chr15:1665508 2.16E-215 wgd
Cone15ag0360 Cone-Chr15:1665508 Cone18ag1103 Cone-Chr18:8049457 1.14E-299 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44834 PF13639 zf-RING_2 3.20E-11 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0360 K09338 - rcu:8258519 919.072