Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0383 ATGGATCGAAGAGACCCAGCAGGATTTTCCGGGTCACAATCTTTCTATATGCAGCAGAGAGAAACATCTCCAAATCTACAATTCCAATCCTACCCTGAAAGCAATACCATTGGAGGACCAACTTTACCAGCCGAACCATCCTCTAGAATTTCACGTTATGGTGTTAATATGGGCGTTGCAATTTCCGGAGCGCCCCCTAGCGAGCCTGTCAAGAGGAAAAGAGGAAGGCCTAGGAAATACGGACTGGACCGGACTTTCTCATTGGCCTTGTCCCCCTCATCTTCTACAAATCCCGGGACAATGACATCAGCAAGAAAAAGGCCTAGAGGGCGGCCGCCCGGGTCCGGCAAGAAGCCACAATTATTAGCTTCTCCCGAAAAATGGAAGCTGTCTGATTCGGCGGGGATGGGATTTACCCCTCATATTATCACCATTGCAATAGGAGAAGACATTGCAACAAAAATTATGTCGTTTTCAGAACAGGGGCTGAGGGGCGTATGTGTCTTATCAGCAAATGGTTTGGTTTCTTCTGTTACTCTACGTCAGCCTTCTTCTTCAGGAGCCACTGTAACATTCGAGGGGCATTTTGAGATAATATCTCTTTCAGGCTCGTACATGTTTAGCGATGGTGATAGTAGCTCCAGCCGGAACTTTTCTGGCAGCTTAAGCATATCGGTTGCTAGTCCCGATGGTTGTGTTATTGGAGGCGGAGTTGGAGGATTGCTTATTGCTGCAAGCCCTGTTCAGGTTATATTGGGGAGCTTCTTATGGCGCGGTTCAAACACAAAGAGCAAGAATAGAGAAGCTAAAGAAGGTGTCATTGACACGGATCGTCGAACAGTAGATGATCCAATGGCTATAAGTGGTTTGCTGTCAGATCAACAAACTCTGATCACTCCGATCAATTCCGAAAGTGTTTGGACCTCAATGGATATGTCTAATGCCCATAATATGGACATTGATTTGATGCGAGGATGA 978 46.42 MDRRDPAGFSGSQSFYMQQRETSPNLQFQSYPESNTIGGPTLPAEPSSRISRYGVNMGVAISGAPPSEPVKRKRGRPRKYGLDRTFSLALSPSSSTNPGTMTSARKRPRGRPPGSGKKPQLLASPEKWKLSDSAGMGFTPHIITIAIGEDIATKIMSFSEQGLRGVCVLSANGLVSSVTLRQPSSSGATVTFEGHFEIISLSGSYMFSDGDSSSSRNFSGSLSISVASPDGCVIGGGVGGLLIAASPVQVILGSFLWRGSNTKSKNREAKEGVIDTDRRTVDDPMAISGLLSDQQTLITPINSESVWTSMDMSNAHNMDIDLMRG 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1761417 1763852 - Conep15aG0039200.1 Cone15ag0383 453511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0383 325 Gene3D - 140 275 - -
Cone15ag0383 325 MobiDBLite consensus disorder prediction 11 42 - -
Cone15ag0383 325 MobiDBLite consensus disorder prediction 87 103 - -
Cone15ag0383 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 278 IPR039605 GO:0003680(InterPro)
Cone15ag0383 325 CDD DUF296 139 231 IPR005175 -
Cone15ag0383 325 SMART AT_hook_2 71 83 IPR017956 GO:0003677(InterPro)
Cone15ag0383 325 SMART AT_hook_2 106 118 IPR017956 GO:0003677(InterPro)
Cone15ag0383 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 257 - -
Cone15ag0383 325 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677(InterPro)
Cone15ag0383 325 PRINTS AT-hook-like domain signature 71 81 IPR017956 GO:0003677(InterPro)
Cone15ag0383 325 ProSiteProfiles PPC domain profile profile. 134 277 IPR005175 -
Cone15ag0383 325 MobiDBLite consensus disorder prediction 1 125 - -
Cone15ag0383 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 255 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0383 Cone-Chr15:1761417 Cone6ag0720 Cone-Chr6:3625087 2.15E-58 dispersed
Cone11ag0417 Cone-Chr11:2068492 Cone15ag0383 Cone-Chr15:1761417 1.02E-95 wgd
Cone12ag0311 Cone-Chr12:1708357 Cone15ag0383 Cone-Chr15:1761417 4.14E-38 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone15ag0383 Cone-Chr15:1761417 1.85E-181 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone18ag1088 Cone-Chr18:7983114 3.38E-101 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone6ag0774 Cone-Chr6:3945485 2.78E-50 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone8ag0311 Cone-Chr8:1798718 9.28E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0383 - - - 0.0