Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0397 ATGGCTGTAGTGATTCCTTCGCCATCAATCACGCAGAGATCAGTTGGTACGATCAGTTATCCAGACCTTTCGGGAATCATGGCGAGTTCTAGCAGAGAGATTGTAGAGGCTCCCATGGCGAGAGTTAATGAAGATGTAGTTTATGTTGCAGTAGATGAAGATGTTAAGAAGAGCAGAATGAATTTGGTCTATGCATTGCAGAACTCGAGGGGGAGGAAGATTTGCATAGTTCATGTCATCGTGCCTGCGCAGTTCATTTCCGTTTTTGGCGGAAAAATGCCAGTGAGCTCGCTTGACCCACGACTAGTGAGAGCACAACGAGAAAAAGACAAGCAAAAGGCAGACAAGATCTTGGATGAATATCTTCGTCTGTCTCGCCAAACAGGGGCACATGTAGAGAAACTACTTTTTGAAGCAGACAGAATCGAGAAGGGAATTGTTGAACTCATTTCCCTGCATGGGATTAAGAAGCTTGTTATGGGAGCAGCAGCAGACAAGCACTATTCAAAGAAAATGGTGGAGCTCAGGTCAAATAAAGCCAAATATGTTTGCGAGCAAGCACCAGCCACCTGTCACATCCAGTTTGTTTGCAAGGGATTCCTTATTCACACTAGGCAAGGTCAGTCACAAATAGCTAAGGAAGAAGTTGCATTTCAATCAGCACAAGCAAGTTTCAATGCCGAAGCTGCCAACTGCAGCTCATGGAGATCACAGTCACTTCCAGTTGGGGAGAATAATAATGCAAATCTTAGTCCGGCTCTAGAGATATCTCATAGTGTGAGATCACTTCAGATTGATCAGTCCAGAAGGAGTGTAATGTCTACTTCTTCCCCTGATGTTTCTGAAGGGTTCCCAACCATACATAGCAAGTCGTATGCTGGAGGGATGTACGAGGAATGGGATGTTCCATCAAGAACTACTCCTTCTGAGCTTTCATCATCTCAAAGCTCTTCTAGTGGATATTATGATATAGTTTCCACTTCATCACTCGGAATTGAGGAAAATGAAAATTGGCACCATCGTAATTCATCCCATCTTGACGATTTGGGTAAAAGTGCAGATGATAGTCTTTTTAACCAACTTGAACAAGTGATGACAGAGGCTGACAATGCAAAGCGAGAAGCCCTTGAAGAGTCACTCAAGCGTGGAAAAGCTGAGAAAGAAGGCCTTAATGCTTATCGCAAGGCTAGAGCTTCAGAAAACTTATATGCTGAAGAGTTCAAACAAAGGAAAGAAATTGAAGAAGCACTAGAAAGAGAAAGAGAACAACTTGACAAAATGAAGAACCAAAGAGATCAGGTCATGGAAGAACTTCAAATTGCCCAAAATCAGAAATCAAATCTTGAGAACAAAATTTCAGAATATGATCTGATGGTGAAAGAGTTGGAGCAGAAGTTTTTCTCTGCTATGGAACTGCTAGAGAACTACAAACAAGAAAGAGAGGAGTTACAGATGCAGCGTGATGATGTGCTCAGAGAAGCAGAGGAGCTGAGGCAAAGACTAGGAGAGGTCTCGGGTCAACAAATTCCTCGATTCTTCTCAGAGTTTCCATTCTTTGAGATTGAAGAAGCGACTCAAAACTTTGACCCATCTCTCAAGATTGGGGAAGGAGGATATGGGAGCATTTATAGAGGTGTCCTACGTCACACCGAGGTTGCTATAAAAATGCTACACTCTGATAGTATGCAGGGTCCCTCAGAGTTTCAACAGGAGGTTGATGTGCTGAGTAAGATCAGACACCCCAATCTTGTCACCCTTATTGGAGCCTGCCCAGAAGCTTGGATTCTCATTTATGAATATCTCCCTAATGGAAGCCTTGAAGATCGGCTCAGCTGCAAGGACAACAGTCCTCCATTATCGTGGCAAGCGCGTATTCGCCTCATCACAGAGCTATGCTCTGCCCTCATATTTCTTCACTCAAGCAAACCCAATAGCATTATCCATGGTGATTTGAAGCCTGCAAATATACTTCTTGATGCCAACCATGCATGCAAACTAAGTGACTTTGGTATAAGCCGTTTATTATTATCTCAAGACGAAACAGCCAATAACAATGTGACAAGCATATGCAGAACAGACCCAAAGGGAACTTTCGTTTACATGGATCCAGAATTCCTTTCAACAGGAGAGCTTACAACAAAGTCGGATGTTTACTCATTTGGAATCATATTATTAAGGCTGTTGACCGGAAAACCAGCCCTGAGGTTAATAAAGGAAGTGGAATATGCAGTAGTGAAAGGAAACTTGAAATCTCTCTTGGATCCTTTAGCTGGAGACTGGCCCTTTGTACAGGCTGAGCAGTTGACTCGTTTGGCATTGAGGTGTTGTGATAATAATAGGAAGAACCGGCCTGACCTTGCTCATGATGTCTGGAGAGTGCTTGAACCCATGAGGGCTTCATGTGGAGGCTCATCTGCATTTCAGCTCGGTTCTGAGGAACACTTTCTGCCACCTCCCTATTTTATCTGCCCTATTTTCCAGGAAGTGATGCAAGATCCTCATGTAGCCGCAGATGGTTTTACATATGAAGCTGAGGCATTGAAAGGATGGTTAGACAGTGGCCACGACACATCACCAATGACAAACCTCAAGCTTGATAACACTAATCTTGTACCAAATCGGGCTCTCCGCTCTGCAATTCAGGAGTGGTTGCAAAGGAATTGA 2664 43.54 MAVVIPSPSITQRSVGTISYPDLSGIMASSSREIVEAPMARVNEDVVYVAVDEDVKKSRMNLVYALQNSRGRKICIVHVIVPAQFISVFGGKMPVSSLDPRLVRAQREKDKQKADKILDEYLRLSRQTGAHVEKLLFEADRIEKGIVELISLHGIKKLVMGAAADKHYSKKMVELRSNKAKYVCEQAPATCHIQFVCKGFLIHTRQGQSQIAKEEVAFQSAQASFNAEAANCSSWRSQSLPVGENNNANLSPALEISHSVRSLQIDQSRRSVMSTSSPDVSEGFPTIHSKSYAGGMYEEWDVPSRTTPSELSSSQSSSSGYYDIVSTSSLGIEENENWHHRNSSHLDDLGKSADDSLFNQLEQVMTEADNAKREALEESLKRGKAEKEGLNAYRKARASENLYAEEFKQRKEIEEALEREREQLDKMKNQRDQVMEELQIAQNQKSNLENKISEYDLMVKELEQKFFSAMELLENYKQEREELQMQRDDVLREAEELRQRLGEVSGQQIPRFFSEFPFFEIEEATQNFDPSLKIGEGGYGSIYRGVLRHTEVAIKMLHSDSMQGPSEFQQEVDVLSKIRHPNLVTLIGACPEAWILIYEYLPNGSLEDRLSCKDNSPPLSWQARIRLITELCSALIFLHSSKPNSIIHGDLKPANILLDANHACKLSDFGISRLLLSQDETANNNVTSICRTDPKGTFVYMDPEFLSTGELTTKSDVYSFGIILLRLLTGKPALRLIKEVEYAVVKGNLKSLLDPLAGDWPFVQAEQLTRLALRCCDNNRKNRPDLAHDVWRVLEPMRASCGGSSAFQLGSEEHFLPPPYFICPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHDTSPMTNLKLDNTNLVPNRALRSAIQEWLQRN 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1860274 1865104 + Conep15aG0040600.1 Cone15ag0397 453525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0397 887 MobiDBLite consensus disorder prediction 301 320 - -
Cone15ag0397 887 CDD STK_N 46 199 - -
Cone15ag0397 887 Gene3D HUPs 46 193 IPR014729 -
Cone15ag0397 887 ProSitePatterns Protein kinases ATP-binding region signature. 534 555 IPR017441 GO:0005524(InterPro)
Cone15ag0397 887 CDD RING-Ubox_WDSUB1-like 818 873 - -
Cone15ag0397 887 PANTHER OS02G0152300 PROTEIN 47 881 IPR051348 -
Cone15ag0397 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 887 IPR013083 -
Cone15ag0397 887 ProSiteProfiles Protein kinase domain profile. 528 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0397 887 ProSiteProfiles U-box domain profile. 816 887 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone15ag0397 887 Coils Coil 358 388 - -
Cone15ag0397 887 MobiDBLite consensus disorder prediction 267 286 - -
Cone15ag0397 887 Gene3D Phosphorylase Kinase; domain 1 507 600 - -
Cone15ag0397 887 SUPERFAMILY Protein kinase-like (PK-like) 506 787 IPR011009 -
Cone15ag0397 887 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 163 - -
Cone15ag0397 887 MobiDBLite consensus disorder prediction 305 320 - -
Cone15ag0397 887 MobiDBLite consensus disorder prediction 267 284 - -
Cone15ag0397 887 SMART Ubox_2 820 883 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone15ag0397 887 Pfam Protein kinase domain 533 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0397 887 Pfam U-box domain 818 887 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone15ag0397 887 SMART serkin_6 528 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0397 887 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Cone15ag0397 887 FunFam receptor-like protein kinase FERONIA 493 600 - -
Cone15ag0397 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0397 887 SUPERFAMILY RING/U-box 813 887 - -
Cone15ag0397 887 Coils Coil 403 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1243 Cone-Chr11:9296996 Cone15ag0397 Cone-Chr15:1860274 4.15E-133 dispersed
Cone14ag0360 Cone-Chr14:1669211 Cone15ag0397 Cone-Chr15:1860274 8.48E-192 dispersed
Cone15ag0395 Cone-Chr15:1854784 Cone15ag0397 Cone-Chr15:1860274 2.02E-33 dispersed
Cone15ag0397 Cone-Chr15:1860274 Cone5ag0877 Cone-Chr5:3748656 7.80E-157 dispersed
Cone1ag1167 Cone-Chr1:55758725 Cone15ag0397 Cone-Chr15:1860274 2.45E-52 dispersed
Cone1ag1168 Cone-Chr1:55761347 Cone15ag0397 Cone-Chr15:1860274 1.47E-34 dispersed
Cone15ag0396 Cone-Chr15:1857752 Cone15ag0397 Cone-Chr15:1860274 2.00E-44 tandem
Cone15ag0397 Cone-Chr15:1860274 Cone15ag0398 Cone-Chr15:1865723 1.29E-156 tandem
Cone11ag0427 Cone-Chr11:2145364 Cone15ag0397 Cone-Chr15:1860274 9.08E-124 wgd
Cone15ag0397 Cone-Chr15:1860274 Cone18ag1077 Cone-Chr18:7896688 6.31E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82133 PF04539 Sigma70_r3 6.30E-16 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0397 - - - 0.0