Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag0411 | ATGGGTTTTCCGGTCGGATACACAGAAGTTCTCTTTCCCAACGCCTTTCTCCACGTACTCTCCCTTCTTGGTATAATCCGGAATCTGATTCTGTCCCTCTTCAGATTCCTCGGCCTGTCGGAATTATTCGAAACGACAGTCGTTTGGCCCGAAACGCACACGCGATTACCCGACATCCCGCCCGTATCCGCTCTCTTGATCAGGGAACTGCTGCCGGTGGTGCAATTCTCTGACGTCATGTCGGTCGACCCGCCGGAGAGCTGCGCGGTTTGCCTGTATGAGTTTGAAGGCGGGGAGGAGATCAGGTGGTTGGCCAACTGTAAGCACATTTTCCACAGGACCTGTTTGGACCGTTGGATGGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCCCTTCGTGCCTGATGAGATGCAGGATGAGTTCAATCAACGGCTCTGGGCTGCTTCTGGTGTGTCTGATTCTTACAGCGAGTAG | 480 | 53.54 | MGFPVGYTEVLFPNAFLHVLSLLGIIRNLILSLFRFLGLSELFETTVVWPETHTRLPDIPPVSALLIRELLPVVQFSDVMSVDPPESCAVCLYEFEGGEEIRWLANCKHIFHRTCLDRWMDHDQKTCPLCRTPFVPDEMQDEFNQRLWAASGVSDSYSE | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 1932700 | 1933335 | - | Conep15aG0042000.1 | Cone15ag0411 | 453539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag0411 | 159 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 139 | IPR013083 | - | |
Cone15ag0411 | 159 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 131 | IPR001841 | - | |
Cone15ag0411 | 159 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 9 | 140 | - | - | |
Cone15ag0411 | 159 | FunFam | RING-H2 finger protein ATL73 | 67 | 138 | - | - | |
Cone15ag0411 | 159 | SUPERFAMILY | RING/U-box | 87 | 137 | - | - | |
Cone15ag0411 | 159 | Pfam | Ring finger domain | 87 | 131 | IPR001841 | - | |
Cone15ag0411 | 159 | CDD | RING-H2_RHA1-like | 88 | 134 | - | - | |
Cone15ag0411 | 159 | SMART | ring_2 | 88 | 130 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1190 | Cone-Chr10:8785417 | Cone15ag0411 | Cone-Chr15:1932700 | 2.14E-16 | dispersed | |
Cone15ag0411 | Cone-Chr15:1932700 | Cone3ag1272 | Cone-Chr3:31560196 | 1.10E-16 | dispersed | |
Cone11ag0437 | Cone-Chr11:2199346 | Cone15ag0411 | Cone-Chr15:1932700 | 2.00E-76 | wgd | |
Cone14ag0373 | Cone-Chr14:1746923 | Cone15ag0411 | Cone-Chr15:1932700 | 2.24E-109 | wgd | |
Cone15ag0411 | Cone-Chr15:1932700 | Cone18ag1070 | Cone-Chr18:7865316 | 2.40E-76 | wgd | |
Cone15ag0411 | Cone-Chr15:1932700 | Cone6ag0797 | Cone-Chr6:4050799 | 2.92E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag0411 | K16281 | - | cit:127900876 | 258.455 |