Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0411 ATGGGTTTTCCGGTCGGATACACAGAAGTTCTCTTTCCCAACGCCTTTCTCCACGTACTCTCCCTTCTTGGTATAATCCGGAATCTGATTCTGTCCCTCTTCAGATTCCTCGGCCTGTCGGAATTATTCGAAACGACAGTCGTTTGGCCCGAAACGCACACGCGATTACCCGACATCCCGCCCGTATCCGCTCTCTTGATCAGGGAACTGCTGCCGGTGGTGCAATTCTCTGACGTCATGTCGGTCGACCCGCCGGAGAGCTGCGCGGTTTGCCTGTATGAGTTTGAAGGCGGGGAGGAGATCAGGTGGTTGGCCAACTGTAAGCACATTTTCCACAGGACCTGTTTGGACCGTTGGATGGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCCCTTCGTGCCTGATGAGATGCAGGATGAGTTCAATCAACGGCTCTGGGCTGCTTCTGGTGTGTCTGATTCTTACAGCGAGTAG 480 53.54 MGFPVGYTEVLFPNAFLHVLSLLGIIRNLILSLFRFLGLSELFETTVVWPETHTRLPDIPPVSALLIRELLPVVQFSDVMSVDPPESCAVCLYEFEGGEEIRWLANCKHIFHRTCLDRWMDHDQKTCPLCRTPFVPDEMQDEFNQRLWAASGVSDSYSE 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1932700 1933335 - Conep15aG0042000.1 Cone15ag0411 453539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0411 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 139 IPR013083 -
Cone15ag0411 159 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Cone15ag0411 159 PANTHER RING ZINC FINGER PROTEIN-RELATED 9 140 - -
Cone15ag0411 159 FunFam RING-H2 finger protein ATL73 67 138 - -
Cone15ag0411 159 SUPERFAMILY RING/U-box 87 137 - -
Cone15ag0411 159 Pfam Ring finger domain 87 131 IPR001841 -
Cone15ag0411 159 CDD RING-H2_RHA1-like 88 134 - -
Cone15ag0411 159 SMART ring_2 88 130 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1190 Cone-Chr10:8785417 Cone15ag0411 Cone-Chr15:1932700 2.14E-16 dispersed
Cone15ag0411 Cone-Chr15:1932700 Cone3ag1272 Cone-Chr3:31560196 1.10E-16 dispersed
Cone11ag0437 Cone-Chr11:2199346 Cone15ag0411 Cone-Chr15:1932700 2.00E-76 wgd
Cone14ag0373 Cone-Chr14:1746923 Cone15ag0411 Cone-Chr15:1932700 2.24E-109 wgd
Cone15ag0411 Cone-Chr15:1932700 Cone18ag1070 Cone-Chr18:7865316 2.40E-76 wgd
Cone15ag0411 Cone-Chr15:1932700 Cone6ag0797 Cone-Chr6:4050799 2.92E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0411 K16281 - cit:127900876 258.455