Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0424 ATGGAAGATGATTGGGATCTGCACGCGGTGGTCAAAGGCTGCACCGCCACTGCCACCACCTCCTGCACCTCCTCCTCGCCTCCTACACCCCCTCTTATAACTGACTTTGCTTCTAACTCTACCACCCCCTGCTTTTCCCCTTCTTACACCGACCACTTTTGTACCCAATTTGTCTCCCTCCCAGATCGTTTCGAAGACTTGCATGAGCTGTTGTTCAACCCTTTCTGCCACAAATCTCCCCATCAACCGCCGCTGACTTCTCTACCGACCACCATGTCACCCATATCCTCTCTAGCTCTAGCTCAACAAAAACAACGGTCTTGTAATAACAAGCATTCTAATGGCGACTCTGTACTCACTACCCCACGATCCAAAAGAAGAAAAAACCAGATGAAGAAGGTTTGGCAAGTAGCAGCAGAGTCTCTCTCCTCAGACATATGGGCATGGCGAAAATACGGCCAAAAGCCTATCAAAGGTTCTCCTTATCCTAGGGGATATTATAGATGTAGTACCTCAAAAGGATGTATGGCCCGGAAACAAGTGGAGCGGAACAGATCCGACACGAATATGTTCATAGTCACGTACACGGCAGAGCACAACCACCCTGCTCCGATGCACCGGAACTCTCTGGCGGGGTCCACGCGTCAGAAGTCATCGACGCCTCCAGCTGTCGCGGCAAGCGAAGGAAACGAAGCTCCGACAAAGCAATCTGCTTGCTCTTCCGCACCGTCGTCTATGGAGGAAGAAACGATGGAAAACAAGGAGAAGAAGGTGGAAGAACATGGGCTCGTGATATCGGATATGGTGGTGAGCGAGGATTTCTTTTTGGGTTTACAGGAACTTGACGGAACTGGAACCATCGGAGACTACGTTTTCGATAAGTATCCAACGGATTCTGGGATTCCCTGGATTGTTAATAGTAGTGCTGCCACCACCGCCACTAGTAGCTGA 951 50.26 MEDDWDLHAVVKGCTATATTSCTSSSPPTPPLITDFASNSTTPCFSPSYTDHFCTQFVSLPDRFEDLHELLFNPFCHKSPHQPPLTSLPTTMSPISSLALAQQKQRSCNNKHSNGDSVLTTPRSKRRKNQMKKVWQVAAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSTSKGCMARKQVERNRSDTNMFIVTYTAEHNHPAPMHRNSLAGSTRQKSSTPPAVAASEGNEAPTKQSACSSAPSSMEEETMENKEKKVEEHGLVISDMVVSEDFFLGLQELDGTGTIGDYVFDKYPTDSGIPWIVNSSAATTATSS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2001244 2002427 + Conep15aG0043300.1 Cone15ag0424 453552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0424 316 MobiDBLite consensus disorder prediction 106 120 - -
Cone15ag0424 316 SMART WRKY_cls 143 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0424 316 MobiDBLite consensus disorder prediction 207 247 - -
Cone15ag0424 316 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0424 316 FunFam WRKY transcription factor 22 127 197 - -
Cone15ag0424 316 Gene3D WRKY domain 127 197 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0424 316 SUPERFAMILY WRKY DNA-binding domain 138 204 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0424 316 MobiDBLite consensus disorder prediction 198 257 - -
Cone15ag0424 316 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0424 316 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 260 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone15ag0424 316 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0050 Cone-Chr14:312009 Cone15ag0424 Cone-Chr15:2001244 5.44E-44 dispersed
Cone15ag0055 Cone-Chr15:335860 Cone15ag0424 Cone-Chr15:2001244 1.47E-41 dispersed
Cone15ag0424 Cone-Chr15:2001244 Cone9ag1134 Cone-Chr9:7884428 3.90E-38 dispersed
Cone15ag0424 Cone-Chr15:2001244 Cone15ag0427 Cone-Chr15:2010547 5.96E-16 proximal
Cone11ag0447 Cone-Chr11:2253478 Cone15ag0424 Cone-Chr15:2001244 3.60E-57 wgd
Cone14ag0387 Cone-Chr14:1810039 Cone15ag0424 Cone-Chr15:2001244 1.13E-170 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone18ag1061 Cone-Chr18:7777622 1.23E-59 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone6ag0812 Cone-Chr6:4127490 4.73E-37 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone9ag0811 Cone-Chr9:3902804 1.21E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44839 PF16213 DCB 1.60E-39 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0424 K13425 - csv:101217082 266.159