Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0427 ATGGATATAGGAGGACAGGAAATCCCTAACCCTAATAATAAAGATAGTTACATCTTCACCCGGCCAACTGCTCTTCCATCTTCTTCTACTACTACCTCATTTGATCATCAACATGATCATGAGAATAACATTGACTGGGTCTGCAGCCTTCTCTCGAGCCCGCCACCTGCAGCTTCAAGTGGGCCAATTAGTGATGATCAGAGCATGAACATGATCCAGTCCATCATGGAAACTAGAAATGATCTGATGTCAGTTTCGTCGGCAGCTATGGCAGATGACCGAAATCGTCGAAACGACAGAGATGGTCATAAGGGTAATGATAATGGTACGATGAAGAATATGAAGAATAAGAAGTGTGATAGTAGTAGAATAGCGATGAAGAGAAAGGCGACCCGTCCTAGGTTTGCTTTTCAGACAAGAAGTGCCGAAGATATTCTCGATGACGGCTATCGATGGCGTAAATACGGTCAAAAATCTGTCAAGAACAGCCCTTTTCCCAGGAGCTACTATCGTTGTACGCAGCACACATGCAACGTGAAGAAACAGGTGCAGAGGCTATCAAAGGATACGGGCATCGTAGTGACAACGTACGAAGGTGTTCATAATCATCCCTCTGAGAAGCTCATGGAAACCCTAACCCCTCTTCTCAGACAAATGCAATTCCTCGCTACCTTCTAA 678 44.69 MDIGGQEIPNPNNKDSYIFTRPTALPSSSTTTSFDHQHDHENNIDWVCSLLSSPPPAASSGPISDDQSMNMIQSIMETRNDLMSVSSAAMADDRNRRNDRDGHKGNDNGTMKNMKNKKCDSSRIAMKRKATRPRFAFQTRSAEDILDDGYRWRKYGQKSVKNSPFPRSYYRCTQHTCNVKKQVQRLSKDTGIVVTTYEGVHNHPSEKLMETLTPLLRQMQFLATF 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2010547 2011538 + Conep15aG0043600.1 Cone15ag0427 453555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0427 225 Pfam WRKY DNA -binding domain 147 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0427 225 FunFam WRKY transcription factor 57 132 206 - -
Cone15ag0427 225 MobiDBLite consensus disorder prediction 1 36 - -
Cone15ag0427 225 MobiDBLite consensus disorder prediction 92 115 - -
Cone15ag0427 225 ProSiteProfiles WRKY domain profile. 141 206 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0427 225 SMART WRKY_cls 146 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0427 225 SUPERFAMILY WRKY DNA-binding domain 139 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0427 225 Gene3D WRKY domain 129 205 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0427 225 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 204 IPR044810 GO:0003700(InterPro)
Cone15ag0427 225 MobiDBLite consensus disorder prediction 9 33 - -
Cone15ag0427 225 MobiDBLite consensus disorder prediction 90 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0389 Cone-Chr14:1820231 Cone15ag0427 Cone-Chr15:2010547 1.32E-104 dispersed
Cone15ag0427 Cone-Chr15:2010547 Cone2ag0036 Cone-Chr2:196168 1.00E-40 dispersed
Cone15ag0424 Cone-Chr15:2001244 Cone15ag0427 Cone-Chr15:2010547 5.96E-16 proximal
Cone15ag0427 Cone-Chr15:2010547 Cone6ag0813 Cone-Chr6:4129505 2.19E-52 wgd
Cone15ag0427 Cone-Chr15:2010547 Cone9ag0812 Cone-Chr9:3904808 1.10E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44840 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0427 - - - 0.0