Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0465 ATGTATAAGGAACTATGGAAAGCATGTGCAGGGCCTCTAGCAGAAATTCCTCAACCTGGGGAAAAAGTTTTCTATTTTCCTCAAGGTCATATGGAGCAATTGATAGCTTCAACAAATCAGGAGCTAAATGAGCAAATTCCCCATTTTGATCTTCCTGCCAAAATTCTCTGTCGCGTTTTCAACGTTCGTCTTATGGCAGAAACAGAAACAGATGAGGTTTATGCTCAAATTACTCTGCATCCAGAACGAGATCAAAATGATCTGTCATTGAATCCGGACTCACCTGATCCTTCGAGAAAAACCGTTCATTCATTTTGCAAAATTCTAACAGCTTCTGATACTAGCACTCATGGAGGGTTCTCGGTTCTTCGTAAACATGCCTTTGAATGCTTGCCTCCGTTGGACATGAATCAACCAACCCCTACTCAAGAATTAGTCACCAAGGATCTTCACGGCTATGAATGGAGATTCAAGCATATTTTCCGAGGTCAACCAAGGAGGCATTTGCTAACAACCGGATGGAGTACTTTTGTTGCTTCTAAGAGACTAGCTGCAGGGGATGCCTTCGTTTTCTTGAGGGGTGAAAATGGGGAATTGAGAGTTGGTGTAAGGCGACTTGCTCATCAGCAAAGTCCGATGCCTTCTTCTGTGATTTCGAGCCAAAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCCATTAGGACCGAAACCCTTTTCATTGTTTATTACTGGCCAAGGAAAACATGCCAATTCGTCATTGGCTTAAACAAGTACTTAGAGTCAGTCAAGAACAGGTTTTCCGTTGGTATGCGGTTTAGAATGAGATTTGAGGGAGAGGAATCACCTGAAAGAAGGTTTACTGGAACAATAGCTGGAGTAGGGGATCTATCTCCACAATGGCTGGGTTCTACATGGCGATCCTTGAAGGTTCAATGGGATGAACCAGCAACGATAGAAAGGCCAGAGAGGGTTTCATGTTGGGAGATAGAACCTTTTGTACCTTCAACTTCCTTAAACTTCACTCAACCTTCACCAAAATGTAAAAGGCCTCGTGCCGTCAAAATCCCTTCTTCTGAAATTACTTCCAGTTCAGCTGGCTCAACATTCCGGTTTCAAGGACCATCACCTTCTTCCCATGAAGTCCGAAGCAGTGATAAGCCGGTGGGCTGCTGGGCTTCTAGGCCCATCAATGTCTTCTCTCTCAACCTTTTCCCGGACACAACCAATGATAATTATCCAGTGGAGAAAGGGACGAAATCCGAGACTACTACTCCCACTGGGTGCATTCTGTTTGGAGTTGACTTGGCCAAAGGTGTGTCCGCAAAGGAAGAGAAGCAAACTATGTTAGAGGCTGCAGGGAAGAGAACCCGTACAAAGGTTCAAATGGACGGGGTATCAGTTGGCCGAGCGGTTGATTTGAGCATGTTGAAAGGATATGAAGATCTTATAGACGAGCTCGAGAATATATTTGCTATTAAAGGAGAGCTTCATATTAAGAATAAATGGGCTATTGTTTTTACTGACAATGAAGATGATAAGATGTTAGCTGGAGATGACCCGTGGCCGGAGTTCTGTAAGATGGTGAGAAAGATCTTTATCTGCTCAATCGATGAGGTGAAGAGGATGACTGGAAATAAAAGCCAGCTGAATTCATTAGCCTCACTAGAATGTGATCGAGAGACGTGTGTGAGCATGGATCCCGAGGCATAG 1716 44.06 MYKELWKACAGPLAEIPQPGEKVFYFPQGHMEQLIASTNQELNEQIPHFDLPAKILCRVFNVRLMAETETDEVYAQITLHPERDQNDLSLNPDSPDPSRKTVHSFCKILTASDTSTHGGFSVLRKHAFECLPPLDMNQPTPTQELVTKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVASKRLAAGDAFVFLRGENGELRVGVRRLAHQQSPMPSSVISSQSMHLGVLATASHAIRTETLFIVYYWPRKTCQFVIGLNKYLESVKNRFSVGMRFRMRFEGEESPERRFTGTIAGVGDLSPQWLGSTWRSLKVQWDEPATIERPERVSCWEIEPFVPSTSLNFTQPSPKCKRPRAVKIPSSEITSSSAGSTFRFQGPSPSSHEVRSSDKPVGCWASRPINVFSLNLFPDTTNDNYPVEKGTKSETTTPTGCILFGVDLAKGVSAKEEKQTMLEAAGKRTRTKVQMDGVSVGRAVDLSMLKGYEDLIDELENIFAIKGELHIKNKWAIVFTDNEDDKMLAGDDPWPEFCKMVRKIFICSIDEVKRMTGNKSQLNSLASLECDRETCVSMDPEA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2208844 2211738 + Conep15aG0047600.1 Cone15ag0465 453593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0465 571 SMART B3_2 105 207 IPR003340 GO:0003677(InterPro)
Cone15ag0465 571 SUPERFAMILY CAD & PB1 domains 455 533 - -
Cone15ag0465 571 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 546 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone15ag0465 571 FunFam Auxin response factor 267 338 - -
Cone15ag0465 571 Gene3D - 267 339 - -
Cone15ag0465 571 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677(InterPro)
Cone15ag0465 571 Pfam Auxin response factor 231 311 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone15ag0465 571 Pfam B3 DNA binding domain 105 205 IPR003340 GO:0003677(InterPro)
Cone15ag0465 571 ProSiteProfiles PB1 domain profile. 457 538 IPR053793 -
Cone15ag0465 571 CDD B3_DNA 103 205 IPR003340 GO:0003677(InterPro)
Cone15ag0465 571 SUPERFAMILY DNA-binding pseudobarrel domain 96 234 IPR015300 -
Cone15ag0465 571 Gene3D - 102 206 IPR015300 -
Cone15ag0465 571 FunFam Auxin response factor 103 207 - -
Cone15ag0465 571 Pfam AUX/IAA family 444 535 IPR033389 -
Cone15ag0465 571 MobiDBLite consensus disorder prediction 345 388 - -
Cone15ag0465 571 Gene3D - 453 545 - -
Cone15ag0465 571 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0465 Cone-Chr15:2208844 Cone19ag0688 Cone-Chr19:5790271 1.57E-193 dispersed
Cone14ag0428 Cone-Chr14:2007796 Cone15ag0465 Cone-Chr15:2208844 0 wgd
Cone15ag0465 Cone-Chr15:2208844 Cone6ag0864 Cone-Chr6:4412479 2.72E-196 wgd
Cone15ag0465 Cone-Chr15:2208844 Cone9ag0869 Cone-Chr9:4229505 2.30E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44846 PF00069 Pkinase 2.00E-52 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0465 K14486 - csv:101205805 742.265