Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0481 ATGGGTAGTGGAGATAAGACCCTAAGGCTGTTCAGTCTTCATGGATCGAAGAAGCAAGGGATTAGAGATATTCCAAAAGGGTGTTTGGCGATCAAAGTAGGTCATGAAGATGAAGAACAGCAGAGATTTGTGGTGCCTGTTAATTATTTTAATCACCCTTTGTTCTTGCAATTGCTTAAGGAAGCTGAAGAGGAGTATGGATTTGAACAGAAAGGTACTATTACTATTCCTTGCCACGTGGAGGAGTTTAGGTACGTTCAAGGTAGGATTGAGAGATCCATGCACCGCCACCACCACCACCACCACCACCACCATCACCATCACCACCATGTTGGTTGCTTTAGGGTTTGA 351 44.44 MGSGDKTLRLFSLHGSKKQGIRDIPKGCLAIKVGHEDEEQQRFVVPVNYFNHPLFLQLLKEAEEEYGFEQKGTITIPCHVEEFRYVQGRIERSMHRHHHHHHHHHHHHHHVGCFRV 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2284468 2285375 + Conep15aG0049300.1 Cone15ag0481 453609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0481 116 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 86 IPR003676 GO:0009733(InterPro)
Cone15ag0481 116 Pfam Auxin responsive protein 19 86 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0481 K14488 - - ath:AT2G46690 147.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0481 Cone-Chr15:2284468 Cone9ag1195 Cone-Chr9:8518440 2.46E-31 dispersed
Cone14ag0451 Cone-Chr14:2132839 Cone15ag0481 Cone-Chr15:2284468 4.02E-63 wgd
Cone15ag0481 Cone-Chr15:2284468 Cone18ag0993 Cone-Chr18:7292818 2.51E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g984 Blo06g01052 . . . . . . . . . Cma02g01144 Cma15g01004 . Car15g00938 . Cpe05g00581 . . . . . . . . Cla01g00017 . . . . . . Cone14ag0451 Cone15ag0481 . Cone18ag0993 . Csa05g00018 Chy09g01463 . . . . Bda15g00796 . Bpe12g00336 Bma08g00398 . . Cmo02g01175 . . . . . . Cpe13g00332 . . . . . . . . . . . . . . . . . Cme09g02014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002741 2 2 2 1 2 2 1 2 2 2 2 2 1 2 2 3 2 4 4 2 2 2 2 0 1 2 1 2 2 1 57