Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0502 ATGACACAGCTCCATAGCACTTTAATGGAGGCCATTCAAGGGGGACCCATTAATCCTTGTTTCTATGAGGAAGAAGGACATGTGGGTTTTTTGGAATGCATGTTTGAACAGAGAATGGCAGCAAATGAAGATGAAGAAGATGAAGAAGAAGGAGACGAAGCGGACAACATGCCTTTTCTCCAGATGCTACAAGCTAATGCAGAAGAATATTCCTCTTCTTCTTCACCATTACTAATGCTTAACAACATACCATTGATTAATAACCCATCAAGCTGCAGCTTTCAGACGATGTTAAGGCTTCAACAGCAGCAGCAGCAACAACAACAGCAACACAACCACCACCACCTCAATAATAACAATTACATTCAACAGCCTACCACTAACTTGTCGGACAAACAACAAGAAGAGAAGCTGATGTCAAGTACTAATTGTACTACTACTGCTACTAATAACAATAATAATAAGGAAAATGGTGCGGTAAGGAGGAAGAGGAAGAGGACAAGACCAAGTAAGAACAAGGAAGAAGTAGAGAGTCAGAGAATGACTCATATTGCTGTTGAGCGGAACCGTAGAAAGCAAATGAATGACCATCTAAATGTCCTTAGATCGCTCATGCCCTCTTCCTACATTCAAAGGGGAGACCAAGCTTCAATAATTGGAGGAGCAATAGATTTTGTGAATGAATTGGAGCAGCTACTTCAATCACTAGAAGCACAAAAGAGAGCAAGAAAAGGAGACGTGATTAGCATCAGTGTTAATGGTGAAAATTCAGCGACCTCATCATCTTCTTCTTCCTCTTCTTCCGCTTCCGCAATGGCTTCAACAGTAATGACATCACTCTCACCATCATCAAGTTATAGATTAATTCATGGGGAAGATCATCAAGGAGGGGGAAGAAGAAAAGGAGGAGAAGGTCAAGGTGGCAGTTTTATAACAGCAGAGAACAAATCAGAAGCAGCAGATATAGAAGTGACTGTGATTCACAGCCATGTCAACTTAAAGATTCAATGCCCAAGAAGACCTGGCCAGTTGCTAAAAGCCATTGTTGCTTTACAAGATCTCTCCCTCTCCGTTCTGCATCTCAATATTACCACTTCCCAATCTTTAGTTCTCTTCTCTTTCAATCTCAAGATAGAGGATGAGTGCGAGCTAGGATCAGCCAATGAGATTGCAGCAGCTGTTCATCAAATCTTTAGCTACATCAACAGTAGTAGTTGCTAA 1221 41.28 MTQLHSTLMEAIQGGPINPCFYEEEGHVGFLECMFEQRMAANEDEEDEEEGDEADNMPFLQMLQANAEEYSSSSSPLLMLNNIPLINNPSSCSFQTMLRLQQQQQQQQQQHNHHHLNNNNYIQQPTTNLSDKQQEEKLMSSTNCTTTATNNNNNKENGAVRRKRKRTRPSKNKEEVESQRMTHIAVERNRRKQMNDHLNVLRSLMPSSYIQRGDQASIIGGAIDFVNELEQLLQSLEAQKRARKGDVISISVNGENSATSSSSSSSSSASAMASTVMTSLSPSSSYRLIHGEDHQGGGRRKGGEGQGGSFITAENKSEAADIEVTVIHSHVNLKIQCPRRPGQLLKAIVALQDLSLSVLHLNITTSQSLVLFSFNLKIEDECELGSANEIAAAVHQIFSYINSSSC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2407532 2409738 + Conep15aG0051400.1 Cone15ag0502 453630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0502 406 Gene3D - 169 244 IPR036638 GO:0046983(InterPro)
Cone15ag0502 406 MobiDBLite consensus disorder prediction 284 310 - -
Cone15ag0502 406 FunFam Basic helix-loop-helix transcription factor 169 244 - -
Cone15ag0502 406 MobiDBLite consensus disorder prediction 102 181 - -
Cone15ag0502 406 MobiDBLite consensus disorder prediction 102 156 - -
Cone15ag0502 406 Coils Coil 226 246 - -
Cone15ag0502 406 SMART finulus 184 235 IPR011598 GO:0046983(InterPro)
Cone15ag0502 406 PANTHER TRANSCRIPTION FACTOR FAMA 95 399 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone15ag0502 406 Pfam Helix-loop-helix DNA-binding domain 179 230 IPR011598 GO:0046983(InterPro)
Cone15ag0502 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 229 IPR011598 GO:0046983(InterPro)
Cone15ag0502 406 Pfam Plant bHLH transcription factor, ACT-like domain 322 390 IPR054502 -
Cone15ag0502 406 CDD bHLH_AtFAMA_like 181 244 - -
Cone15ag0502 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 242 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0502 Cone-Chr15:2407532 Cone4ag0399 Cone-Chr4:1815296 9.72E-53 dispersed
Cone14ag0468 Cone-Chr14:2244215 Cone15ag0502 Cone-Chr15:2407532 6.52E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44850 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0502 - - - 0.0