Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0529 ATGGAGCACCATATCAACATTGAGAATTGTGAAGCTCATCATGAACATGAAGCCTCTTTTGGCTCTTCTTCCACCACCACCACCACTAACACTTCCACTTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCACCTCCCACATGGCAGATTCTCCGGCTCAAAAACGTTCAAGAAAATCTAATCAAGACGTCGACAGTGACAATGATATGGTCAAGGTCACTAATAAGAAGCAAAAGACTGAAGTCAGTGGTAGTGGTAATAGTAATGGTAAAGGTACGAAGCACCTGACATATCGAGGAGTAAGAATGCGAAATTGGGGTAAATGGGTGTCGGAAATTCGTGAACCGAGAAAGAAGTCAAGGATTTGGCTCGGGACTTACCCGACAGCTGAAATGGCAGCTCGAGCTCATGATGTAGCCTCATTAGCCATCAAAGGCAGCTCCGCTTACCTTAATTTCCCCGAACTCGAAAAACATCTCCCCCGCCCGCTCTCCACAGCTCCCAAAGACATACAAGCTGCGGCCTCTGAGGCCGCCGCCTCGACATTTCTAGACACAGTTAGTCAGGGTGAAACGACAGAATTAGCTACAGTTGATCACGAACCGTTGAGCCGAGCCGAGCTTTCTAATTCGGATACGTCACATGAGGAGTCGACAAGTTCTCATTCAAACAATAATATCGATGATCACTATGATGACACATTGTTTGACCTACCGGATCTCCCTCTCGATGGCTCCGATCGAAACAACGATATCGATGGATTGTTCTATTATTCTTCTTGTTCTTCTAATTGGCCACTTTGTGAAGCCGATAGTGGGTTTCGGCTTGAGGAGCCATGTGATCAATGGGATCAATTCTACCACGACAACTTTCCTAGCCAAGTTGCTTCTACCACAAGCTGA 900 46.67 MEHHINIENCEAHHEHEASFGSSSTTTTTNTSTSSSSSSSSSSTSHMADSPAQKRSRKSNQDVDSDNDMVKVTNKKQKTEVSGSGNSNGKGTKHLTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVASLAIKGSSAYLNFPELEKHLPRPLSTAPKDIQAAASEAAASTFLDTVSQGETTELATVDHEPLSRAELSNSDTSHEESTSSHSNNNIDDHYDDTLFDLPDLPLDGSDRNNDIDGLFYYSSCSSNWPLCEADSGFRLEEPCDQWDQFYHDNFPSQVASTTS 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2592911 2594121 + Conep15aG0054100.1 Cone15ag0529 453657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0529 299 MobiDBLite consensus disorder prediction 19 50 - -
Cone15ag0529 299 MobiDBLite consensus disorder prediction 1 95 - -
Cone15ag0529 299 SUPERFAMILY DNA-binding domain 96 153 IPR016177 GO:0003677(InterPro)
Cone15ag0529 299 CDD AP2 97 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 MobiDBLite consensus disorder prediction 76 93 - -
Cone15ag0529 299 MobiDBLite consensus disorder prediction 51 75 - -
Cone15ag0529 299 Gene3D AP2/ERF domain 96 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 Pfam AP2 domain 97 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 78 244 IPR051032 -
Cone15ag0529 299 MobiDBLite consensus disorder prediction 192 227 - -
Cone15ag0529 299 MobiDBLite consensus disorder prediction 206 220 - -
Cone15ag0529 299 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Cone15ag0529 299 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 MobiDBLite consensus disorder prediction 1 18 - -
Cone15ag0529 299 SMART rav1_2 96 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0529 299 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0395 Cone-Chr12:2301242 Cone15ag0529 Cone-Chr15:2592911 2.98E-47 dispersed
Cone15ag0529 Cone-Chr15:2592911 Cone17ag1123 Cone-Chr17:8317270 6.87E-40 dispersed
Cone14ag0506 Cone-Chr14:2492981 Cone15ag0529 Cone-Chr15:2592911 3.09E-101 wgd
Cone15ag0529 Cone-Chr15:2592911 Cone4ag1392 Cone-Chr4:11231228 3.44E-20 wgd
Cone15ag0529 Cone-Chr15:2592911 Cone6ag0657 Cone-Chr6:3328609 3.72E-31 wgd
Cone15ag0529 Cone-Chr15:2592911 Cone9ag0662 Cone-Chr9:3150302 2.40E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44855 PF05633 BPS1 6.00E-06 CL0133 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0529 - - - 0.0