Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag0541 | ATGGACGTGTACGGCTTACCAAGCTCTTCTGGAGCTGAGTGCTTCCCCATTGACGACCTTCTCGACTTCCCTAACGATGACGACCACCTCTTTTCCGCTTCCACCATTACCTCCTCCGATACCGCCACTATAACCTCCTCCTATGACACCCATTTGGTCGGCCACCAGAACAAATTTTCTCCGCCCCAGCCCTCATCCGACGTTAATCCCTCCTCCTTCGCCGACGATCTCTGCGTCCCCAACGATGAGGTCGCTCAGCTGGAATGGCTTTCACAGTTCGTCGAGGATTCCTTCACTCATTTCCCGTTGACCGACGTCGCCGCATTCCCGCCTGAAACATCGTCTATCTCGGGGAGAAGCAGCAGATGCAGCGGCAGCACTACTACAGATGGGTACTCAAGATCAAGGTCGTCAGCTTCCTTGCTCGAGTCACCGACGGTGGAGAAAACCATGAAACCAACCGTCGGTAAAGATCATCGACACATATTATCAGGCGGAGGGGTGCGTAGGTGTGCACACTGCGCATCGGAGAAGACCCCGCAGTGGCGCTCGGGACCACAAGGACCAAAAACATTATGCAACGCGTGCGGGGTACGTTATAAATCGGGTCGGTTGGTACCCGAATACAGACCAGCAGCGAGCCCAACTTTCGTGCTGACTCAGCACTCGAATTCGCACCGAAAAGTTCTAGAACTCCGTCGGAAGAAGGAGGTGGTGCGGCAACAACATCAACGTCCGCTGCAAGAAGGAGGAGGGGATCAACAACAAGAGCAGTTCTATCCTCACCCGCACGACTTCCAAGTTTGCTGA | 810 | 54.57 | MDVYGLPSSSGAECFPIDDLLDFPNDDDHLFSASTITSSDTATITSSYDTHLVGHQNKFSPPQPSSDVNPSSFADDLCVPNDEVAQLEWLSQFVEDSFTHFPLTDVAAFPPETSSISGRSSRCSGSTTTDGYSRSRSSASLLESPTVEKTMKPTVGKDHRHILSGGGVRRCAHCASEKTPQWRSGPQGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRKKEVVRQQHQRPLQEGGGDQQQEQFYPHPHDFQVC | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2676378 | 2677448 | + | Conep15aG0055300.1 | Cone15ag0541 | 453669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag0541 | 269 | PANTHER | GATA TRANSCRIPTION FACTOR | 16 | 137 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cone15ag0541 | 269 | Pfam | GATA zinc finger | 171 | 205 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone15ag0541 | 269 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 163 | 227 | - | - | |
Cone15ag0541 | 269 | MobiDBLite | consensus disorder prediction | 110 | 147 | - | - | |
Cone15ag0541 | 269 | CDD | ZnF_GATA | 170 | 217 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone15ag0541 | 269 | MobiDBLite | consensus disorder prediction | 238 | 269 | - | - | |
Cone15ag0541 | 269 | ProSiteProfiles | GATA-type zinc finger domain profile. | 169 | 201 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone15ag0541 | 269 | PIRSF | Txn_fac_GATA_plant | 1 | 259 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cone15ag0541 | 269 | Gene3D | - | 166 | 248 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cone15ag0541 | 269 | SMART | GATA_3 | 165 | 215 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone15ag0541 | 269 | MobiDBLite | consensus disorder prediction | 109 | 149 | - | - | |
Cone15ag0541 | 269 | FunFam | GATA transcription factor | 159 | 246 | - | - | |
Cone15ag0541 | 269 | ProSitePatterns | GATA-type zinc finger domain. | 171 | 196 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone15ag0541 | Cone-Chr15:2676378 | Cone17ag0146 | Cone-Chr17:745532 | 3.80E-52 | dispersed | |
Cone14ag0515 | Cone-Chr14:2572755 | Cone15ag0541 | Cone-Chr15:2676378 | 3.48E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44857 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag0541 | - | - | - | 0.0 |