Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0541 ATGGACGTGTACGGCTTACCAAGCTCTTCTGGAGCTGAGTGCTTCCCCATTGACGACCTTCTCGACTTCCCTAACGATGACGACCACCTCTTTTCCGCTTCCACCATTACCTCCTCCGATACCGCCACTATAACCTCCTCCTATGACACCCATTTGGTCGGCCACCAGAACAAATTTTCTCCGCCCCAGCCCTCATCCGACGTTAATCCCTCCTCCTTCGCCGACGATCTCTGCGTCCCCAACGATGAGGTCGCTCAGCTGGAATGGCTTTCACAGTTCGTCGAGGATTCCTTCACTCATTTCCCGTTGACCGACGTCGCCGCATTCCCGCCTGAAACATCGTCTATCTCGGGGAGAAGCAGCAGATGCAGCGGCAGCACTACTACAGATGGGTACTCAAGATCAAGGTCGTCAGCTTCCTTGCTCGAGTCACCGACGGTGGAGAAAACCATGAAACCAACCGTCGGTAAAGATCATCGACACATATTATCAGGCGGAGGGGTGCGTAGGTGTGCACACTGCGCATCGGAGAAGACCCCGCAGTGGCGCTCGGGACCACAAGGACCAAAAACATTATGCAACGCGTGCGGGGTACGTTATAAATCGGGTCGGTTGGTACCCGAATACAGACCAGCAGCGAGCCCAACTTTCGTGCTGACTCAGCACTCGAATTCGCACCGAAAAGTTCTAGAACTCCGTCGGAAGAAGGAGGTGGTGCGGCAACAACATCAACGTCCGCTGCAAGAAGGAGGAGGGGATCAACAACAAGAGCAGTTCTATCCTCACCCGCACGACTTCCAAGTTTGCTGA 810 54.57 MDVYGLPSSSGAECFPIDDLLDFPNDDDHLFSASTITSSDTATITSSYDTHLVGHQNKFSPPQPSSDVNPSSFADDLCVPNDEVAQLEWLSQFVEDSFTHFPLTDVAAFPPETSSISGRSSRCSGSTTTDGYSRSRSSASLLESPTVEKTMKPTVGKDHRHILSGGGVRRCAHCASEKTPQWRSGPQGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRKKEVVRQQHQRPLQEGGGDQQQEQFYPHPHDFQVC 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2676378 2677448 + Conep15aG0055300.1 Cone15ag0541 453669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0541 269 PANTHER GATA TRANSCRIPTION FACTOR 16 137 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone15ag0541 269 Pfam GATA zinc finger 171 205 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0541 269 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 227 - -
Cone15ag0541 269 MobiDBLite consensus disorder prediction 110 147 - -
Cone15ag0541 269 CDD ZnF_GATA 170 217 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0541 269 MobiDBLite consensus disorder prediction 238 269 - -
Cone15ag0541 269 ProSiteProfiles GATA-type zinc finger domain profile. 169 201 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0541 269 PIRSF Txn_fac_GATA_plant 1 259 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone15ag0541 269 Gene3D - 166 248 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone15ag0541 269 SMART GATA_3 165 215 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0541 269 MobiDBLite consensus disorder prediction 109 149 - -
Cone15ag0541 269 FunFam GATA transcription factor 159 246 - -
Cone15ag0541 269 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0541 Cone-Chr15:2676378 Cone17ag0146 Cone-Chr17:745532 3.80E-52 dispersed
Cone14ag0515 Cone-Chr14:2572755 Cone15ag0541 Cone-Chr15:2676378 3.48E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44857 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0541 - - - 0.0