Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0545 ATGGCTCTTGTACTTGGTTTTTCGTTTTTACAATATTCGACTCTAATACTTACACCTCTCTCTTTGCTTTTAGTAAGTCCTTGTTCTTGTCGTGACTATCCAATGTTCCTTAATGCCTCTAAAGTTCAAACAAGAAATGGTTGGTCAGTCGCCGGAGCGACATGGTACGGGAGCCCTAATGGTGCTGGAAGTGATGGTGGAGCTTGTGGTTATGGCAATGCGGTAGGGCAGACTCCATTCTCTTCAATGATAACTGCAGCCGGCCCCTCTCTCTTTGATGACGGCAAAGGATGTGGAACTTGTTACCAGGTGAAATGCACAACTAATAAGGCTTGCTCCGGTAATCCGGTAACCGTGGTTATAACTGACGAGTGCCCCGGAGGCCCTTGCCTTGCCGAGACATATCACTTTGATTTAAGTGGAACTGCTTTTGGGGCCATGGCAAAGTCTAGCCAGTCTGATCAACTCCGCAACGTCGGCGTTTTGAAAATTCAGTTTAGAAGGGTTGAGTGTAACTATCATGGAGTACCAATAACATTTCGTGTTGATGCGGGTTCAAGCAGCTACTACTTTGCAATCTTAATCGAATACGAAAATGGAGATGGAGACCTTGCGAAAGTGGAACTGAAACAAGCCGCAGCTAACTCTGCATGGCTTCCAATGCAGCAGTCATGGGGTGCGGTTTGGAAACTTAACCCTGGCTCAGAGTTGAAGGCTCCATTCTCTATTAGCCTAACCACAAAACAGTCTGGTCAAACTCTTCTAGCAAATAATGTGATTCCTGCTGATTGGAAGCCTGGTCAAACATATCGAGCTCGAGACAATTTTCAAGTTTAA 837 45.52 MALVLGFSFLQYSTLILTPLSLLLVSPCSCRDYPMFLNASKVQTRNGWSVAGATWYGSPNGAGSDGGACGYGNAVGQTPFSSMITAAGPSLFDDGKGCGTCYQVKCTTNKACSGNPVTVVITDECPGGPCLAETYHFDLSGTAFGAMAKSSQSDQLRNVGVLKIQFRRVECNYHGVPITFRVDAGSSSYYFAILIEYENGDGDLAKVELKQAAANSAWLPMQQSWGAVWKLNPGSELKAPFSISLTTKQSGQTLLANNVIPADWKPGQTYRARDNFQV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2711301 2712409 + Conep15aG0055700.1 Cone15ag0545 453673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0545 278 Pfam Lytic transglycolase 86 165 IPR009009 -
Cone15ag0545 278 SUPERFAMILY Barwin-like endoglucanases 47 196 IPR036908 -
Cone15ag0545 278 CDD DPBB_EXPB_N 48 171 - -
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone15ag0545 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
Cone15ag0545 278 Gene3D - 36 172 IPR036908 -
Cone15ag0545 278 PANTHER EXPANSIN-B3 23 276 - -
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576(InterPro)
Cone15ag0545 278 Pfam Expansin C-terminal domain 178 261 IPR007117 -
Cone15ag0545 278 SMART dpbb_1 84 166 IPR007112 -
Cone15ag0545 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Cone15ag0545 278 SUPERFAMILY PHL pollen allergen 178 271 IPR036749 -
Cone15ag0545 278 Gene3D - 173 277 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0545 Cone-Chr15:2711301 Cone8ag1502 Cone-Chr8:11379574 9.34E-73 dispersed
Cone11ag0575 Cone-Chr11:3310570 Cone15ag0545 Cone-Chr15:2711301 5.30E-126 wgd
Cone14ag0518 Cone-Chr14:2595107 Cone15ag0545 Cone-Chr15:2711301 1.54E-118 wgd
Cone15ag0545 Cone-Chr15:2711301 Cone18ag0928 Cone-Chr18:6698060 1.60E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0545 - - - 0.0