Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0562 ATGACTCGGTTGTATCAGGTTTGGCTTCAGAAGAACCAGTTTACAGGTCAGATTCCAGATTTGTCAAAATGTCAGAATCTGTTTGATCTTCAGCTTAGAGATAATCAGTTTACTGGGCTCGTTCCGTCATCTTTAACTAAGATTTCAAGCTTGCAGAATGTTTCTTTAGATAACAACAATCTTCAAGGGCCTATTCCTGTGTTTGGATCGGAAGTAACAGTTACTCTAGATGGGACTAATAGCTTTTGTAAAGACACTCCTGGGCCTTGTGATCCTCTAGTCACTATATTGCTCGAGATTGCTGGAGGTTTCGGGTTTCCTCTTTCTCTAGCTGATGCTTGGGAAGGTAATGTTCCTTGCAAAGGTTGGTCTTTCATTGTTTGCACTAGTAATAATATCACAACCATTAATCTTGGAAAGCAGCATTTGTCAGGGACAATCTCTCCTGCATTTGGGAATATCACAACTTTGAAGACGTTGTATTTGAATGATAATAATTTGGCGGGTTCAATACCTGATAATTTAGCAACATTGCCTCAGCTTCAAGTACTAGATGTGGCTAATAATAATCTTAGTGGGATTGTACCGAAATTTGGAGATGGGGTCAAGGTGACTACGAGTGGGAACCCCTTGATCGGAACAATTTTAAGCCCCGGAAATGATAGAGGAAGTAGTTCTGGAGGAACAAATGGGACCACTGCAAGTGGAAGCTCATCTCCTTCGTCGAATAAATCTTCAGTCTCGGCAGGTTTGATTGCTGGTGTGGTTATTGCTGTTGTTGTGTTCGTTCTGATTATATTGTTTGTGGTGATACAATGTTATGTTAAGAACAAGCATAAGAAATTTGGGAAGGTGAATGATACTGAGAATGGTACAGAACTTGCTAATAAGAGTGAGACAGGGAGCGGTGTGTATGGCTATGCTGGAATTCCGAGTGAATTGCGAAGCCAAAGTAGTGGTGATCCTGGTGACTTTCATGTTTTTGAAGGTGGGAATGTTTCCATTTCGATACAAGTCTTGAGGCAAGTGACAAATAATTTTAGTGAAGACAACATTCTGGGTAGAGGAGGATTTGGAGTTGTGTACAAGGGGGAATTGCATGATGGGACTAAAATTGCAGTAAAAAGGATGGAATCTGTGGCAATGGGTACTAAAGGGTTGAATGAATTCCAGGCTGAAATTGCTGTCCTAACTAAAGTCAGGCATAGGCATTTAGTTGCTCTTTTGGGGTATTGCATAAATGGGAATGAGAGATTGTTGGTGTATGAGTATATGCCTCAAGGGACTTTAACTCAACATTTGTTTGATTGGGAAGAAAATGGGTGTTCTCCTCTGACTTGGAAACAAAGAGTTAGCATAGCATTAGATGTGGGGAGAGGAGTAGAATATTTACACAGCTTAGCTCAACAAAGTTTTATTCATAGGGATTTGAAACCGTCCAATATACTTCTTGGTGATGACATGAGGGCTAAGGTTGCAGATTTCGGTTTGGTAAGAAATGCACCTGATGGAAAATACTCTGTCGAAACCCGTTTGGCTGGAACGTTTGGATATCTTGCTCCTGAATATGCAGCAACCGGGAGAGTGACAACAAAAGTTGACGTGTATGCATTCGGGGTGGTTTTAATGGAACTGATAACGGGCCGGAGAGCATTAGATGATACCATGCCAGATGAGAGGTCCCACTTGGTCACGTGGTTCCGTAGGGTCCTCATCAACAAGGAGAACATTCCGAAAACCATTGATCAAGCCCTAAATCCAGATGAAGAAACCATGGAGAGCATATACAAAGTGGCCGAGCTAGCAGGCCACTGCACGGCCCGTGAGCTGCACCAGAGACCTGACATGGGCCATGCTGTCAACATATTGGGTCCACTCGTCGAGCAGTGGAAGCCCAGTTGCCAACAAGATGAGGATGCTTACGGCATTGACTTGCATATGAGCCTTCCCCAAGCTCTTCAAAGATGGCAAGCCAATGAAGGAACTTCTACGATGTTTAACAGTATGTCTTTCTCTAACACCCAATCGAGCATTCCCTCTAAACCTGCCGGATTTGCCGATTCCTTTGATTCGATGGATTGCAGATGA 2088 42.86 MTRLYQVWLQKNQFTGQIPDLSKCQNLFDLQLRDNQFTGLVPSSLTKISSLQNVSLDNNNLQGPIPVFGSEVTVTLDGTNSFCKDTPGPCDPLVTILLEIAGGFGFPLSLADAWEGNVPCKGWSFIVCTSNNITTINLGKQHLSGTISPAFGNITTLKTLYLNDNNLAGSIPDNLATLPQLQVLDVANNNLSGIVPKFGDGVKVTTSGNPLIGTILSPGNDRGSSSGGTNGTTASGSSSPSSNKSSVSAGLIAGVVIAVVVFVLIILFVVIQCYVKNKHKKFGKVNDTENGTELANKSETGSGVYGYAGIPSELRSQSSGDPGDFHVFEGGNVSISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAMGTKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWEENGCSPLTWKQRVSIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVTWFRRVLINKENIPKTIDQALNPDEETMESIYKVAELAGHCTARELHQRPDMGHAVNILGPLVEQWKPSCQQDEDAYGIDLHMSLPQALQRWQANEGTSTMFNSMSFSNTQSSIPSKPAGFADSFDSMDCR 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2821303 2824676 - Conep15aG0057400.1 Cone15ag0562 453690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0562 695 FunFam receptor protein kinase TMK1 309 424 - -
Cone15ag0562 695 SMART serkin_6 347 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0562 695 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0562 695 FunFam receptor protein kinase TMK1 425 642 - -
Cone15ag0562 695 FunFam Leucine-rich repeat receptor-like kinase 92 215 - -
Cone15ag0562 695 Gene3D Ribonuclease Inhibitor 1 90 IPR032675 -
Cone15ag0562 695 CDD STKc_IRAK 353 626 - -
Cone15ag0562 695 Gene3D Transferase(Phosphotransferase) domain 1 425 647 - -
Cone15ag0562 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0562 695 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Cone15ag0562 695 SUPERFAMILY Protein kinase-like (PK-like) 324 623 IPR011009 -
Cone15ag0562 695 SUPERFAMILY L domain-like 3 213 - -
Cone15ag0562 695 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Cone15ag0562 695 Gene3D Ribonuclease Inhibitor 93 215 IPR032675 -
Cone15ag0562 695 ProSiteProfiles Protein kinase domain profile. 347 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0562 695 MobiDBLite consensus disorder prediction 215 243 - -
Cone15ag0562 695 PANTHER OSJNBA0070M12.3 PROTEIN 1 695 IPR052422 -
Cone15ag0562 695 Pfam Leucine Rich repeats (2 copies) 155 191 IPR025875 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0562 K00924 - - csv:101213513 1063.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0539 Cone-Chr14:2689915 Cone15ag0562 Cone-Chr15:2821303 4.01E-234 dispersed
Cone15ag0562 Cone-Chr15:2821303 Cone18ag0903 Cone-Chr18:6407345 5.29e-318 dispersed
Cone14ag0538 Cone-Chr14:2684562 Cone15ag0562 Cone-Chr15:2821303 0 wgd
Cone15ag0562 Cone-Chr15:2821303 Cone7ag0447 Cone-Chr7:2023055 2.67E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82143 PF06376 AGP 6.50E-18 No_clan Cone PK