Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0563 ATGAAGAACCTCCATTTTCTCATTACAATGTTTCCAGCCCAAGGTCACGTAAACCCTGCTCTCCAATTTGCCAAACGCCTCGTCGACCTAGGCACTCGCGTGACCTTTGTCATCAGCATCTCCACCCGGGTTCGCATACCGGAAAGCTTTGCTGCCGCTTCCAGCTTGTCTGTTGTCACTTTCTCGGACGGATATGACAACAGTTTGAAACTGGATGACATCGACATCCAACAGTACTCGCCCGAGCTCAGACGACACGGCTCCCAAGCTCTAATGGATTTTATTACAACGTCAAACTCGAGCGGAAACTGCCCTACTACTTGCCTAGTGTACACCATAGGGCTCTTCTGGGCTGCTGAGGTGGCACACTGGCTCCACGTTCCTTCCGCGCTTCTTTGGGTTCAACCTGCCACGGTTTTCGACATCTGCTATTACTATTTCAATGGTTATGAGGATGTGATAAAGAACGCCGGGAAATCAGATTGCCCATCGAGTTGGGTAGAATTACCGGGATTTCAATTGTTGTTCACTAGCTATGACTTACCTTCTTGTCTACTTCCTTCGTACCCTTGTACACATGTATTTCGTTTATTTAAGGAGCAATTTGAAACGCTTGAGAAAGAGACCAACCCAAGAATACTAGTGAACTCATTTGATGCATTAGAGCATGAAGCATTAAGAGCTATTAATCATAGGTTTAAATTGATTCCGATTGGACCTTTAGTTTGTTGTGACGAAAAGTCATCTCGTACTTGTGCTAAAGACTACGTTGAATGGTTGGATTCAAAGTCCAATTCTTCAATCATTTACATATCTTTCGGGAGCATTTCCGTGTTGGAGAAGAAGCAATCCGAGGAAATCGGACGCGCGTTGTTGGATTGTGGGCGTCCATTTCTATGGGTTATAAGAGATCATGACAAGGATAAGAAAGAAGAAGGTAAGGAAGCATTGAGTTGCATGGAGGAATTGGAGCAACAAGGTAAGATAGTGACCTGGTGCTCTCAGGTGGAAGTGCTAAGTCATCCTTCGTTGGGTTGTTTCCTGACGCATTGTGGGTGGAATTCTACAACGGAAAGCTTGGTATGTGGGATCCCCGTCGTGGCTTTCCCCCAAGTGATCGATCAATGTACGAATGCGAAGATGATTGAAGATGTATGGAAGAGTGGAGTGAGACTGAAGGCTAAAGAGGAAGGGGGTGTAGTTGAAAGTGGTGAGATTTTGAGGTGTTTGGAGTTAGTAATGGGAGAGGGAGAAAGAGGGGAAGAGATGAGGAAGAATGCTAAGAAATGGAAGGAATTGGCTAAGGAAGCTGTTCAAGATGGTGGGTCTTCTGATTTGAATCTCAAGACTTTTGTTGATGGATTTAGGTGA 1371 45.15 MKNLHFLITMFPAQGHVNPALQFAKRLVDLGTRVTFVISISTRVRIPESFAAASSLSVVTFSDGYDNSLKLDDIDIQQYSPELRRHGSQALMDFITTSNSSGNCPTTCLVYTIGLFWAAEVAHWLHVPSALLWVQPATVFDICYYYFNGYEDVIKNAGKSDCPSSWVELPGFQLLFTSYDLPSCLLPSYPCTHVFRLFKEQFETLEKETNPRILVNSFDALEHEALRAINHRFKLIPIGPLVCCDEKSSRTCAKDYVEWLDSKSNSSIIYISFGSISVLEKKQSEEIGRALLDCGRPFLWVIRDHDKDKKEEGKEALSCMEELEQQGKIVTWCSQVEVLSHPSLGCFLTHCGWNSTTESLVCGIPVVAFPQVIDQCTNAKMIEDVWKSGVRLKAKEEGGVVESGEILRCLELVMGEGERGEEMRKNAKKWKELAKEAVQDGGSSDLNLKTFVDGFR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2825761 2827131 - Conep15aG0057500.1 Cone15ag0563 453691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0563 456 FunFam Glycosyltransferase 244 436 - -
Cone15ag0563 456 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 249 395 IPR002213 GO:0008194(InterPro)
Cone15ag0563 456 Gene3D Glycogen Phosphorylase B; 248 436 - -
Cone15ag0563 456 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 453 - -
Cone15ag0563 456 CDD GT1_Gtf-like 4 437 IPR002213 GO:0008194(InterPro)
Cone15ag0563 456 ProSitePatterns UDP-glycosyltransferases signature. 332 375 IPR035595 -
Cone15ag0563 456 Gene3D Glycogen Phosphorylase B; 11 448 - -
Cone15ag0563 456 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 446 - GO:0080043(PANTHER)|GO:0080044(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0563 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0541 Cone-Chr14:2695420 Cone15ag0563 Cone-Chr15:2825761 2.72E-276 dispersed
Cone15ag0563 Cone-Chr15:2825761 Cone18ag0906 Cone-Chr18:6438413 7.85E-158 dispersed
Cone11ag0601 Cone-Chr11:3681139 Cone15ag0563 Cone-Chr15:2825761 1.25E-156 wgd
Cone14ag0540 Cone-Chr14:2692900 Cone15ag0563 Cone-Chr15:2825761 3.49E-213 wgd
Cone15ag0563 Cone-Chr15:2825761 Cone4ag1374 Cone-Chr4:11143945 7.81E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1056 . . . . . . . . Cmo08g00839 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0540 Cone15ag0563 Cone18ag0904 . . . . . Blo02g00397 . . . . . . . . . . Cma08g00869 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014016 0 1 0 0 0 1 0 2 2 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 23