Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0588 ATGGACTCCGAGGACGATATGCATGATGCTAACGATCTTGAGTCGGTGGACGATGATATCTACAGTGGATACATGGACGAGATGGGGCTAGACTACGACAGTGACGATGATGATGTAGAAGCTGATGAGTTTGTTGATGATGATGCTGATAATTTTGATAGGATCGAGTCCCGTCGTCAAGAGAGAAACTTTACCATATTAAAGGAATTAGATATACAGCAATGCCAGGAGGATGATATTTATAGAGTCTCCACTGTTCTTTCGATTTCACATGTTGCTTCAACCATTTTACTTCGTCACTTTAATTGGGATGTCAGCAAAGTGCATGATGAATGGTTCGCTGATGAATATAGGGTAAGGAAACAAGTTGGCTTGTTGGATGCACTAGTTGTTCCACTTTCAAGTGCTAGAGAACTTACGTGTGCGATCTGTTTTGAGTCTCTTCCTCAAGGAAGGATTAAATCAGCAGGTTGTGGCCATCCCTTTTGTACTACATGCTGGGAAGGTTATATTAGTACATCCATTAATGATGGGCCCGGATGTTTGACACTAAGATGTCCCGATCCCTCTTGTTCTGCTGCTATTGGTCAAGATATGATTAATTTATTGGTGTCCAATGAGGATAAGGAGAAATATTCTCGGTACCTTCTTAGATCTTATATTGAAGACAATAGAAAGAGAAAATGGTGTCCTGCACCAGGTTGTGAGTATGCCGTTATCTTCGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTGTGCTCATATGGATTTTGCTGGAATTGTACAGAGGAAGCTCACCGTCCTGTAGACTGCCCTACTGTGGGAAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCATGTCCAAAGTGCAAGCGACCAATTGAGAAGAACCAAGGGTGTATGCACATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTTTGCCTGGGTTCATGGGCAGAGCACGGTGAAAGGACAGGTGGATTTTATGCTTGCAACCGTTATGAGGCTGCTAAGCAAGAAGGCGCGTATGATGAGGCTGAGAGACGGAGAGAAATGGCAAAGAATTCTCTGGAGAGGTACACTCATTATTATGAACGATGGGCTAGCAATCAAACGATTGAGAAACTTAGTGACATAATGTGCACTCCCGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGTTACAGATAATTGAATGTAGGCGGGTTTTGAAGTGGACCTATGCATATGGGTACTACCTACCAGAACAAGAGCATGCTAAGAGCAAGTTCTTCGAGTACTTGCAAGGCGAGGCTGAGTCTGGTCTAGAAAGGCTTCATCAATGTGCTGAAAAGGAACTATTACAGTTCCTTAATGCCGAGGGCCCATCTATAGAATTTAACGACTTTCAAACAAAGTTAGCTGGTCTGACCAGTGTGACTCGTAATTACTTTGAAAACCTGGTCCAAGCATTGGAGAATGGCCTTTCAGATGTCGACTCCCATGGCGGAGCTAGTAGTGGGACAGCAAGCTCCAAAAGTGCAGGAAGTAGTAAGGGAGGGAAAAGTGGTAAGGGCAAGGGAAATGGTCGACACAGTATAAAATACAATGGCAGTTCCGGTTATTGGTCTTGTGATCATTGTACCTATGCCAACATTAGGTCCGCTACCAATTGTCAAATGTGCCACCAACCAAAGTGA 1725 43.54 MDSEDDMHDANDLESVDDDIYSGYMDEMGLDYDSDDDDVEADEFVDDDADNFDRIESRRQERNFTILKELDIQQCQEDDIYRVSTVLSISHVASTILLRHFNWDVSKVHDEWFADEYRVRKQVGLLDALVVPLSSARELTCAICFESLPQGRIKSAGCGHPFCTTCWEGYISTSINDGPGCLTLRCPDPSCSAAIGQDMINLLVSNEDKEKYSRYLLRSYIEDNRKRKWCPAPGCEYAVIFDAGSGNYDVSCLCSYGFCWNCTEEAHRPVDCPTVGKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQTIEKLSDIMCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKSKFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSIEFNDFQTKLAGLTSVTRNYFENLVQALENGLSDVDSHGGASSGTASSKSAGSSKGGKSGKGKGNGRHSIKYNGSSGYWSCDHCTYANIRSATNCQMCHQPK 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2993013 2998704 - Conep15aG0060100.1 Cone15ag0588 453716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0588 574 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Cone15ag0588 574 MobiDBLite consensus disorder prediction 508 539 - -
Cone15ag0588 574 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 76 113 IPR048962 -
Cone15ag0588 574 SUPERFAMILY RING/U-box 291 339 - -
Cone15ag0588 574 SUPERFAMILY RING/U-box 210 279 - -
Cone15ag0588 574 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
Cone15ag0588 574 Pfam IBR domain 294 334 - -
Cone15ag0588 574 CDD BRcat_RBR_ANKIB1 217 281 - -
Cone15ag0588 574 Coils Coil 351 378 - -
Cone15ag0588 574 ProSitePatterns Zinc finger RanBP2-type signature. 551 570 IPR001876 -
Cone15ag0588 574 SMART zf_4 549 573 IPR001876 -
Cone15ag0588 574 ProSiteProfiles Zinc finger RanBP2 type profile. 547 574 IPR001876 -
Cone15ag0588 574 FunFam RBR-type E3 ubiquitin transferase 273 507 - -
Cone15ag0588 574 CDD RING-HC_ARI6-like 138 199 - -
Cone15ag0588 574 Gene3D - 268 507 - -
Cone15ag0588 574 SUPERFAMILY RING/U-box 137 222 - -
Cone15ag0588 574 Gene3D - 542 574 - -
Cone15ag0588 574 MobiDBLite consensus disorder prediction 508 527 - -
Cone15ag0588 574 FunFam RBR-type E3 ubiquitin transferase 135 224 - -
Cone15ag0588 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cone15ag0588 574 CDD Rcat_RBR_ARI7-like 295 349 - -
Cone15ag0588 574 SMART ibrneu5 285 346 IPR002867 GO:0008270(InterPro)
Cone15ag0588 574 SMART ibrneu5 210 272 IPR002867 GO:0008270(InterPro)
Cone15ag0588 574 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 94 387 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone15ag0588 574 SUPERFAMILY Ran binding protein zinc finger-like 547 574 IPR036443 -
Cone15ag0588 574 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0588 K11968 - - gmx:100810427 913.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1148 Cone-Chr10:8302117 Cone15ag0588 Cone-Chr15:2993013 5.76E-54 dispersed
Cone15ag0588 Cone-Chr15:2993013 Cone1ag0851 Cone-Chr1:54266495 8.00E-298 dispersed
Cone14ag0574 Cone-Chr14:2840263 Cone15ag0588 Cone-Chr15:2993013 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1148 . 165 591 ARIADNE family AT4G34370 70.0 7.8e-174 607.4
Cone3ag1137 . 166 605 ARIADNE family AT4G34370 66.7 2.2e-168 589.3
Cone10ag1148 . 59 543 ARIADNE family AT2G16090 74.6 1.5e-213 739.6
Cone3ag1137 . 59 543 ARIADNE family AT2G16090 73.4 5.8e-210 727.6
Cone10ag1148 . 26 546 ARIADNE family AT3G27710 60.0 2.2e-178 622.9
Cone3ag1137 . 26 545 ARIADNE family AT3G27710 59.2 1.4e-175 613.6
Cone10ag1148 . 45 523 ARIADNE family AT3G27720 53.2 2.5e-136 483.0
Cone3ag1137 . 45 524 ARIADNE family AT3G27720 52.3 2.8e-135 479.6
Cone5ag0961 . 65 539 ARIADNE family AT1G05890 72.8 1.3e-219 760.0
Cone1ag0851 . 63 537 ARIADNE family AT1G05890 72.6 4.9e-219 758.1
Cone14ag0574 . 40 512 ARIADNE family AT1G05890 74.0 6.0e-217 751.1
Cone15ag0588 . 1 514 ARIADNE family AT1G05890 64.0 1.2e-209 726.9
Cone1ag0851 . 23 594 ARIADNE family AT1G65430 72.8 1.7e-256 882.5
Cone5ag0961 . 22 596 ARIADNE family AT1G65430 71.9 9.1e-255 876.7
Cone14ag0574 . 7 566 ARIADNE family AT1G65430 69.7 1.1e-239 826.6
Cone15ag0588 . 16 574 ARIADNE family AT1G65430 67.8 1.8e-231 799.3
Cone5ag0961 . 49 458 ARIADNE family AT2G31780 54.9 6.6e-144 508.1
Cone1ag0851 . 47 456 ARIADNE family AT2G31780 54.1 3.6e-142 502.3
Cone14ag0574 . 36 432 ARIADNE family AT2G31780 56.9 5.8e-140 495.0
Cone15ag0588 . 1 439 ARIADNE family AT2G31780 51.9 7.8e-137 484.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72