Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0588 ATGGACTCCGAGGACGATATGCATGATGCTAACGATCTTGAGTCGGTGGACGATGATATCTACAGTGGATACATGGACGAGATGGGGCTAGACTACGACAGTGACGATGATGATGTAGAAGCTGATGAGTTTGTTGATGATGATGCTGATAATTTTGATAGGATCGAGTCCCGTCGTCAAGAGAGAAACTTTACCATATTAAAGGAATTAGATATACAGCAATGCCAGGAGGATGATATTTATAGAGTCTCCACTGTTCTTTCGATTTCACATGTTGCTTCAACCATTTTACTTCGTCACTTTAATTGGGATGTCAGCAAAGTGCATGATGAATGGTTCGCTGATGAATATAGGGTAAGGAAACAAGTTGGCTTGTTGGATGCACTAGTTGTTCCACTTTCAAGTGCTAGAGAACTTACGTGTGCGATCTGTTTTGAGTCTCTTCCTCAAGGAAGGATTAAATCAGCAGGTTGTGGCCATCCCTTTTGTACTACATGCTGGGAAGGTTATATTAGTACATCCATTAATGATGGGCCCGGATGTTTGACACTAAGATGTCCCGATCCCTCTTGTTCTGCTGCTATTGGTCAAGATATGATTAATTTATTGGTGTCCAATGAGGATAAGGAGAAATATTCTCGGTACCTTCTTAGATCTTATATTGAAGACAATAGAAAGAGAAAATGGTGTCCTGCACCAGGTTGTGAGTATGCCGTTATCTTCGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTGTGCTCATATGGATTTTGCTGGAATTGTACAGAGGAAGCTCACCGTCCTGTAGACTGCCCTACTGTGGGAAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCATGTCCAAAGTGCAAGCGACCAATTGAGAAGAACCAAGGGTGTATGCACATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTTTGCCTGGGTTCATGGGCAGAGCACGGTGAAAGGACAGGTGGATTTTATGCTTGCAACCGTTATGAGGCTGCTAAGCAAGAAGGCGCGTATGATGAGGCTGAGAGACGGAGAGAAATGGCAAAGAATTCTCTGGAGAGGTACACTCATTATTATGAACGATGGGCTAGCAATCAAACGATTGAGAAACTTAGTGACATAATGTGCACTCCCGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGTTACAGATAATTGAATGTAGGCGGGTTTTGAAGTGGACCTATGCATATGGGTACTACCTACCAGAACAAGAGCATGCTAAGAGCAAGTTCTTCGAGTACTTGCAAGGCGAGGCTGAGTCTGGTCTAGAAAGGCTTCATCAATGTGCTGAAAAGGAACTATTACAGTTCCTTAATGCCGAGGGCCCATCTATAGAATTTAACGACTTTCAAACAAAGTTAGCTGGTCTGACCAGTGTGACTCGTAATTACTTTGAAAACCTGGTCCAAGCATTGGAGAATGGCCTTTCAGATGTCGACTCCCATGGCGGAGCTAGTAGTGGGACAGCAAGCTCCAAAAGTGCAGGAAGTAGTAAGGGAGGGAAAAGTGGTAAGGGCAAGGGAAATGGTCGACACAGTATAAAATACAATGGCAGTTCCGGTTATTGGTCTTGTGATCATTGTACCTATGCCAACATTAGGTCCGCTACCAATTGTCAAATGTGCCACCAACCAAAGTGA 1725 43.54 MDSEDDMHDANDLESVDDDIYSGYMDEMGLDYDSDDDDVEADEFVDDDADNFDRIESRRQERNFTILKELDIQQCQEDDIYRVSTVLSISHVASTILLRHFNWDVSKVHDEWFADEYRVRKQVGLLDALVVPLSSARELTCAICFESLPQGRIKSAGCGHPFCTTCWEGYISTSINDGPGCLTLRCPDPSCSAAIGQDMINLLVSNEDKEKYSRYLLRSYIEDNRKRKWCPAPGCEYAVIFDAGSGNYDVSCLCSYGFCWNCTEEAHRPVDCPTVGKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQTIEKLSDIMCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKSKFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSIEFNDFQTKLAGLTSVTRNYFENLVQALENGLSDVDSHGGASSGTASSKSAGSSKGGKSGKGKGNGRHSIKYNGSSGYWSCDHCTYANIRSATNCQMCHQPK 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2993013 2998704 - Conep15aG0060100.1 Cone15ag0588 453716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0588 574 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Cone15ag0588 574 MobiDBLite consensus disorder prediction 508 539 - -
Cone15ag0588 574 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 76 113 IPR048962 -
Cone15ag0588 574 SUPERFAMILY RING/U-box 291 339 - -
Cone15ag0588 574 SUPERFAMILY RING/U-box 210 279 - -
Cone15ag0588 574 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
Cone15ag0588 574 Pfam IBR domain 294 334 - -
Cone15ag0588 574 CDD BRcat_RBR_ANKIB1 217 281 - -
Cone15ag0588 574 Coils Coil 351 378 - -
Cone15ag0588 574 ProSitePatterns Zinc finger RanBP2-type signature. 551 570 IPR001876 -
Cone15ag0588 574 SMART zf_4 549 573 IPR001876 -
Cone15ag0588 574 ProSiteProfiles Zinc finger RanBP2 type profile. 547 574 IPR001876 -
Cone15ag0588 574 FunFam RBR-type E3 ubiquitin transferase 273 507 - -
Cone15ag0588 574 CDD RING-HC_ARI6-like 138 199 - -
Cone15ag0588 574 Gene3D - 268 507 - -
Cone15ag0588 574 SUPERFAMILY RING/U-box 137 222 - -
Cone15ag0588 574 Gene3D - 542 574 - -
Cone15ag0588 574 MobiDBLite consensus disorder prediction 508 527 - -
Cone15ag0588 574 FunFam RBR-type E3 ubiquitin transferase 135 224 - -
Cone15ag0588 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cone15ag0588 574 CDD Rcat_RBR_ARI7-like 295 349 - -
Cone15ag0588 574 SMART ibrneu5 285 346 IPR002867 GO:0008270(InterPro)
Cone15ag0588 574 SMART ibrneu5 210 272 IPR002867 GO:0008270(InterPro)
Cone15ag0588 574 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 94 387 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone15ag0588 574 SUPERFAMILY Ran binding protein zinc finger-like 547 574 IPR036443 -
Cone15ag0588 574 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1148 Cone-Chr10:8302117 Cone15ag0588 Cone-Chr15:2993013 5.76E-54 dispersed
Cone15ag0588 Cone-Chr15:2993013 Cone1ag0851 Cone-Chr1:54266495 8.00E-298 dispersed
Cone14ag0574 Cone-Chr14:2840263 Cone15ag0588 Cone-Chr15:2993013 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0588 K11968 - gmx:100810427 913.679