Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag0588 | ATGGACTCCGAGGACGATATGCATGATGCTAACGATCTTGAGTCGGTGGACGATGATATCTACAGTGGATACATGGACGAGATGGGGCTAGACTACGACAGTGACGATGATGATGTAGAAGCTGATGAGTTTGTTGATGATGATGCTGATAATTTTGATAGGATCGAGTCCCGTCGTCAAGAGAGAAACTTTACCATATTAAAGGAATTAGATATACAGCAATGCCAGGAGGATGATATTTATAGAGTCTCCACTGTTCTTTCGATTTCACATGTTGCTTCAACCATTTTACTTCGTCACTTTAATTGGGATGTCAGCAAAGTGCATGATGAATGGTTCGCTGATGAATATAGGGTAAGGAAACAAGTTGGCTTGTTGGATGCACTAGTTGTTCCACTTTCAAGTGCTAGAGAACTTACGTGTGCGATCTGTTTTGAGTCTCTTCCTCAAGGAAGGATTAAATCAGCAGGTTGTGGCCATCCCTTTTGTACTACATGCTGGGAAGGTTATATTAGTACATCCATTAATGATGGGCCCGGATGTTTGACACTAAGATGTCCCGATCCCTCTTGTTCTGCTGCTATTGGTCAAGATATGATTAATTTATTGGTGTCCAATGAGGATAAGGAGAAATATTCTCGGTACCTTCTTAGATCTTATATTGAAGACAATAGAAAGAGAAAATGGTGTCCTGCACCAGGTTGTGAGTATGCCGTTATCTTCGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTGTGCTCATATGGATTTTGCTGGAATTGTACAGAGGAAGCTCACCGTCCTGTAGACTGCCCTACTGTGGGAAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCATGTCCAAAGTGCAAGCGACCAATTGAGAAGAACCAAGGGTGTATGCACATGACATGCACACCACCTTGTAAATTTGAATTTTGCTGGCTTTGCCTGGGTTCATGGGCAGAGCACGGTGAAAGGACAGGTGGATTTTATGCTTGCAACCGTTATGAGGCTGCTAAGCAAGAAGGCGCGTATGATGAGGCTGAGAGACGGAGAGAAATGGCAAAGAATTCTCTGGAGAGGTACACTCATTATTATGAACGATGGGCTAGCAATCAAACGATTGAGAAACTTAGTGACATAATGTGCACTCCCGAGTCACAGCTCAAGTTCATTACAGAAGCCTGGTTACAGATAATTGAATGTAGGCGGGTTTTGAAGTGGACCTATGCATATGGGTACTACCTACCAGAACAAGAGCATGCTAAGAGCAAGTTCTTCGAGTACTTGCAAGGCGAGGCTGAGTCTGGTCTAGAAAGGCTTCATCAATGTGCTGAAAAGGAACTATTACAGTTCCTTAATGCCGAGGGCCCATCTATAGAATTTAACGACTTTCAAACAAAGTTAGCTGGTCTGACCAGTGTGACTCGTAATTACTTTGAAAACCTGGTCCAAGCATTGGAGAATGGCCTTTCAGATGTCGACTCCCATGGCGGAGCTAGTAGTGGGACAGCAAGCTCCAAAAGTGCAGGAAGTAGTAAGGGAGGGAAAAGTGGTAAGGGCAAGGGAAATGGTCGACACAGTATAAAATACAATGGCAGTTCCGGTTATTGGTCTTGTGATCATTGTACCTATGCCAACATTAGGTCCGCTACCAATTGTCAAATGTGCCACCAACCAAAGTGA | 1725 | 43.54 | MDSEDDMHDANDLESVDDDIYSGYMDEMGLDYDSDDDDVEADEFVDDDADNFDRIESRRQERNFTILKELDIQQCQEDDIYRVSTVLSISHVASTILLRHFNWDVSKVHDEWFADEYRVRKQVGLLDALVVPLSSARELTCAICFESLPQGRIKSAGCGHPFCTTCWEGYISTSINDGPGCLTLRCPDPSCSAAIGQDMINLLVSNEDKEKYSRYLLRSYIEDNRKRKWCPAPGCEYAVIFDAGSGNYDVSCLCSYGFCWNCTEEAHRPVDCPTVGKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERTGGFYACNRYEAAKQEGAYDEAERRREMAKNSLERYTHYYERWASNQTIEKLSDIMCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKSKFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSIEFNDFQTKLAGLTSVTRNYFENLVQALENGLSDVDSHGGASSGTASSKSAGSSKGGKSGKGKGNGRHSIKYNGSSGYWSCDHCTYANIRSATNCQMCHQPK | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2993013 | 2998704 | - | Conep15aG0060100.1 | Cone15ag0588 | 453716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag0588 | 574 | ProSiteProfiles | TRIAD supradomain profile. | 137 | 350 | IPR044066 | - | |
Cone15ag0588 | 574 | MobiDBLite | consensus disorder prediction | 508 | 539 | - | - | |
Cone15ag0588 | 574 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 76 | 113 | IPR048962 | - | |
Cone15ag0588 | 574 | SUPERFAMILY | RING/U-box | 291 | 339 | - | - | |
Cone15ag0588 | 574 | SUPERFAMILY | RING/U-box | 210 | 279 | - | - | |
Cone15ag0588 | 574 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 187 | IPR001841 | - | |
Cone15ag0588 | 574 | Pfam | IBR domain | 294 | 334 | - | - | |
Cone15ag0588 | 574 | CDD | BRcat_RBR_ANKIB1 | 217 | 281 | - | - | |
Cone15ag0588 | 574 | Coils | Coil | 351 | 378 | - | - | |
Cone15ag0588 | 574 | ProSitePatterns | Zinc finger RanBP2-type signature. | 551 | 570 | IPR001876 | - | |
Cone15ag0588 | 574 | SMART | zf_4 | 549 | 573 | IPR001876 | - | |
Cone15ag0588 | 574 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 547 | 574 | IPR001876 | - | |
Cone15ag0588 | 574 | FunFam | RBR-type E3 ubiquitin transferase | 273 | 507 | - | - | |
Cone15ag0588 | 574 | CDD | RING-HC_ARI6-like | 138 | 199 | - | - | |
Cone15ag0588 | 574 | Gene3D | - | 268 | 507 | - | - | |
Cone15ag0588 | 574 | SUPERFAMILY | RING/U-box | 137 | 222 | - | - | |
Cone15ag0588 | 574 | Gene3D | - | 542 | 574 | - | - | |
Cone15ag0588 | 574 | MobiDBLite | consensus disorder prediction | 508 | 527 | - | - | |
Cone15ag0588 | 574 | FunFam | RBR-type E3 ubiquitin transferase | 135 | 224 | - | - | |
Cone15ag0588 | 574 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 222 | IPR013083 | - | |
Cone15ag0588 | 574 | CDD | Rcat_RBR_ARI7-like | 295 | 349 | - | - | |
Cone15ag0588 | 574 | SMART | ibrneu5 | 285 | 346 | IPR002867 | GO:0008270(InterPro) | |
Cone15ag0588 | 574 | SMART | ibrneu5 | 210 | 272 | IPR002867 | GO:0008270(InterPro) | |
Cone15ag0588 | 574 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 94 | 387 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Cone15ag0588 | 574 | SUPERFAMILY | Ran binding protein zinc finger-like | 547 | 574 | IPR036443 | - | |
Cone15ag0588 | 574 | Pfam | IBR domain, a half RING-finger domain | 210 | 272 | IPR002867 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1148 | Cone-Chr10:8302117 | Cone15ag0588 | Cone-Chr15:2993013 | 5.76E-54 | dispersed | |
Cone15ag0588 | Cone-Chr15:2993013 | Cone1ag0851 | Cone-Chr1:54266495 | 8.00E-298 | dispersed | |
Cone14ag0574 | Cone-Chr14:2840263 | Cone15ag0588 | Cone-Chr15:2993013 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag0588 | K11968 | - | gmx:100810427 | 913.679 |