Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0601 ATGGGGAAATTCAAGAAGCTTTGGACGAAGAAGACATTAATTGGTCTTGGTTTGGGACAGTTTCTCTCTCTTCTCATCACCTCCACTGGCTTCTCTTCCTCCTCACTTGCTAAGAAAGGAATCAATGCGCCAACTTCTCAGTCCTTTTTAAACTATGCCCTCTTGGCAATTGTCTTTGGGTGTATTATGCTTTATAGAAGGAAACCACTCAAGGCAAAATGGTTCTACTACATACTACTTGGAATAGTAGATGTAGAAGGCAATTACCTTGTGGTGAAGGCATATCAGTACACATCTTTAACGAGTGTGATGCTACTAGATTGCTGGTCGATCCCGTGCGTGTTACTATTCACCTGGCTTTTCTTAAAAACAAAATATCGGTTTCGGAAAATAATCGGAGTAGTTGTTTGTGTTGGAGGCCTAGTCACCGTCATCTTTTCCGATGTTCATGCGGGTGATAGAGCTGGGGGAAGCCATCCTCTTAAAGGCGATGGGCTTGTTATTGCCGGAGCTACGCTTTATGCCGTGAGTAATGTGAGTGAGGAGTTTCTCGTGAAGAATGCCGATACGGTTGAACTAATGGCGATGCTTGGCCTCTTTGGTGCCATTGTTAGTGGTATTCAAATAAGCATAGTTGAACGAAATGCACTACGGTCTATACACTGGACAGGCGGGGCAGTGTTTCCATTTTTTGGATTCTCATTGGCCATGTTCGTCTTTTATTCATTGGTGCCGGAATTGCTTAAGATGAACGGAGCTACGATGCTTAATCTGTCCTTGTTGACATCAGACATGTGGTCCGTTGTGATCCGAATCTTCGCTTACAATGAGAAGGTTGATTGGCTCTACTTTTTGGCCTTTGCAATTGTTGTCATTGGTCTCATTATTTATTCACTGGGCGAGAAAGACCAGAAAAAACATTCGGAAGTTGATGGTGAAGAAGGAGATGATGGGCAAAACCGTAAACATGCCGACGAGGAGAGCGGTTTAGAGAATAATCGTCCCAAACCGAAGACTTTGATAGGGAGTTCTAGTACTGGGGAGACTAGTAGTAAGATGCATGAAAATCATACTCCAGCAACAAAAGTGAGGGAAATAGTTGAGGACAAGAATTCTTGA 1119 43.25 MGKFKKLWTKKTLIGLGLGQFLSLLITSTGFSSSSLAKKGINAPTSQSFLNYALLAIVFGCIMLYRRKPLKAKWFYYILLGIVDVEGNYLVVKAYQYTSLTSVMLLDCWSIPCVLLFTWLFLKTKYRFRKIIGVVVCVGGLVTVIFSDVHAGDRAGGSHPLKGDGLVIAGATLYAVSNVSEEFLVKNADTVELMAMLGLFGAIVSGIQISIVERNALRSIHWTGGAVFPFFGFSLAMFVFYSLVPELLKMNGATMLNLSLLTSDMWSVVIRIFAYNEKVDWLYFLAFAIVVIGLIIYSLGEKDQKKHSEVDGEEGDDGQNRKHADEESGLENNRPKPKTLIGSSSTGETSSKMHENHTPATKVREIVEDKNS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3092173 3094536 + Conep15aG0061400.1 Cone15ag0601 453729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0601 372 MobiDBLite consensus disorder prediction 307 333 - -
Cone15ag0601 372 PANTHER DUF914-RELATED 5 333 IPR052221 -
Cone15ag0601 372 MobiDBLite consensus disorder prediction 337 354 - -
Cone15ag0601 372 MobiDBLite consensus disorder prediction 355 372 - -
Cone15ag0601 372 MobiDBLite consensus disorder prediction 307 372 - -
Cone15ag0601 372 Pfam Solute carrier family 35 9 298 IPR009262 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cone15ag0601 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 302 - -
Cone15ag0601 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0601 K15287 - - mdm:103427950 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0163 Cone-Chr10:812766 Cone15ag0601 Cone-Chr15:3092173 6.78E-94 dispersed
Cone15ag0601 Cone-Chr15:3092173 Cone3ag0183 Cone-Chr3:967128 4.00E-96 dispersed
Cone14ag0588 Cone-Chr14:2920641 Cone15ag0601 Cone-Chr15:3092173 1.24E-130 wgd
Cone15ag0601 Cone-Chr15:3092173 Cone18ag0885 Cone-Chr18:6243147 6.44E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1134 . . . . . . Bma04g01002 . Cmo08g00089 . . Cma14g01492 . Car14g01327 Sed02g1039 . Cpe03g01255 Bhi01g02639 Tan10g1241 Cmetu07g0051 . Hepe05g1271 . Lcy11g1222 . . . . . . . . Cone15ag0601 . . . . . . . . . . . . . . . . Cmo14g01530 . . Car08g00071 . . Cpe17g00996 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001794 1 5 2 2 2 2 3 2 2 1 2 2 3 2 2 3 2 5 3 2 1 1 2 1 2 1 2 2 4 5 69