Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0602 ATGAAGAAGGCCTTTGATCAAACTGTTAGGGATCTTAAGAGGGAGGTCAACAAGACAGTTCTTAAAGTTCCTAGAACAGAACAAAAGATTCTTGATGCTACTAGCAATGAACCTTGGGGTCCTCATGGATCGCTTCTTGCAGATATTGCAGAGGCAACCAGAAACTTTCATGACTACCAGATGATCATGTCAGTAATCTGGAAGAGGATTAATGACACTGGAAAGAACTGGCGGCATGTCTACAAGGGCTTGACTGTTTTGGAGTACTTGGTGGCCCATGGATCAGAGCGTGTAATAGAAGAGATTAGAGAACATGCATATCAAATATCGACCTTATCCGATTTTCAATATATTGACTCCAACGGAAGGGATCAAGGAAACAATGTTAGAAAGAAATCTCAGAGTCTTGTGGTCCTTGTCAATGACAAAGAAAGGATTATCGAGGTCAGACAGAAAGCTGCTGCTAACAGGGATAAGTTCCGGACATCTTCAATGGGAGGAATGTACAAGCCTGGTTCATATTCAAGTACAGGCGGATATGGGGACCGCTATGATGATGATCGTCGTGAGGGACACTTCAGAAGCAGGGATGAAGACAGGTATGGGAGGGAAAGAGAATACGGCTATAGAGATGATGATCGGTATGGGAGAAATGGGGACCCACATGATCGTGATGGAGATAGGTATGGCAGAGATAATCACAGGGATGATGATTATTGGGAAAGAAGTCGAAGTGTTGAGGATTTCTACACTGGCTCAAGGAGTCGGAGCTCTGATCGAGGTAGGGACCGTGCTTCCGACGACGAAGGTCAATATTCATATGGAGGAAGTGGCGCGAGAGCTGATGATCTAGATGGAAGGCGGCTTGATCGAAAATTTTCAGAACAAAATATCGGTGCTCCTCCTAACTATGAAGAAGTTGTGAATGAATCACGGAGTCCTGTTCACAGTGAAAGGGACGGAGAAACAGCAATGGCTGCGCCTAGTGCTTCTTCTCCAGCCAGGTCTGCACCTGGTGCTTCTTCTCCAGCCATGTCTGCTCCTAGTGCTTCTTCTCCACCAAATAAAGATATTACAAGAGAATTAACTGCCACTAGTGTTTCTTTTGCTTCTCCTACCAACCAGGAAATCCAGGCTTCCGATGATTTTGACCCTCGTGGCTCAGTTCCAGCTGCTTCGCCTGCCTCAAACAATGCTGAAATGGAGTTACTTGGCGCTCTATCAGATTCCTTTAACCCATTAGCCATCACGCTCGTTGAACCCGCAACTTCAACTACAGTTCCGGAGCCCGATCTCCATACGAGTCAGGGACCTACATTTTCTGCCACCTCATCAGCATCTAATGCCATAAATCAGAGTTTTGGAGATCCTTTTGGTGACACTCCCTTCAAAGCCATCCCTTCCAATCATACTGCTCAAGCTCAACCACAAGCTAGTGCCGTAAAGCCAGACACACTCTCCAGTTCTGAATTTGGGGACTCATTTTCCGCCATCACTTATCCTACATCCAACATCCCAGAATCATCCACACCAGCAGTTCAGAACATTGACATCCTGGCAGATATCCTTCCTCCTACTGGACCCATTGGCCAGGCTACCCCACCAAATGCTAACAACATTGGTAACAATAATATTCAGCCACAGCCTGGACCTATGGCTATTGTACCTGTTCAAAGTGGTCAAAGTCAAACTGGACAAGTCCCTAGTGGCGTGTGGACAGGTCAAAGTCAAGCTCCCATGAATCCATATGGATCAAATGCACAGCCAGGAGTGGGGAGCTTTTATGCACAGCAAAATCAAACTGGACTTGCTACTCCTCTTGGTGGGCTGCATCAAATTTCACCTGGACCCGGTCCATTGCAGCATGGTAATGATCCTCTGGGAAACTTTCTTCCCAAGGTAGGAATGAACCCTCCCATGGGTTCTCAGCAACCACCTTCCAAGGACAAGTTTGAGACCAAGTCAACAGTTTGGGCCGATACATTAAATAGGGGACTTGTCAATTTGAACATTTCTGGACCTAAAACCAACCCATTGGCAGATATAGGGGTTGATTTTGATGCAATTAATAGGAGGGACAAGAGGATGGAAAAGCCCTCTACAGCTCCAGTAACATCTACAGTGACAATGGGTAAAGCCATGGGCTCCGGTTCCGGTTCGGGGTTGGGCCGAGCTGGTGCGACTGCTCTCAGGCCTCAACAAACCCCAATGATGGGCTCGGGAATGAGCATGGGGGGAACTTATGGAGGCATGAATCAACCAATGGGTATGGGGATGAACAATATGGGTATTGACCGAGGAGTCCCAATGCAACAACCAACTGGGTTACCTCCCCGATCACATATGTATGGTGGTTATAACCCTTCAATGGGCTATACCCCTCAACAGTCATATGGGGGTGGATATAGGTGA 2412 46.89 MKKAFDQTVRDLKREVNKTVLKVPRTEQKILDATSNEPWGPHGSLLADIAEATRNFHDYQMIMSVIWKRINDTGKNWRHVYKGLTVLEYLVAHGSERVIEEIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQSLVVLVNDKERIIEVRQKAAANRDKFRTSSMGGMYKPGSYSSTGGYGDRYDDDRREGHFRSRDEDRYGREREYGYRDDDRYGRNGDPHDRDGDRYGRDNHRDDDYWERSRSVEDFYTGSRSRSSDRGRDRASDDEGQYSYGGSGARADDLDGRRLDRKFSEQNIGAPPNYEEVVNESRSPVHSERDGETAMAAPSASSPARSAPGASSPAMSAPSASSPPNKDITRELTATSVSFASPTNQEIQASDDFDPRGSVPAASPASNNAEMELLGALSDSFNPLAITLVEPATSTTVPEPDLHTSQGPTFSATSSASNAINQSFGDPFGDTPFKAIPSNHTAQAQPQASAVKPDTLSSSEFGDSFSAITYPTSNIPESSTPAVQNIDILADILPPTGPIGQATPPNANNIGNNNIQPQPGPMAIVPVQSGQSQTGQVPSGVWTGQSQAPMNPYGSNAQPGVGSFYAQQNQTGLATPLGGLHQISPGPGPLQHGNDPLGNFLPKVGMNPPMGSQQPPSKDKFETKSTVWADTLNRGLVNLNISGPKTNPLADIGVDFDAINRRDKRMEKPSTAPVTSTVTMGKAMGSGSGSGLGRAGATALRPQQTPMMGSGMSMGGTYGGMNQPMGMGMNNMGIDRGVPMQQPTGLPPRSHMYGGYNPSMGYTPQQSYGGGYR 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3094836 3100883 - Conep15aG0061500.1 Cone15ag0602 453730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0602 803 CDD ENTH 26 142 - -
Cone15ag0602 803 Gene3D - 23 163 IPR008942 -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 782 803 - -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 250 395 - -
Cone15ag0602 803 FunFam Clathrin interactor 1 16 163 - -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 334 381 - -
Cone15ag0602 803 PANTHER EPSIN/ENT-RELATED 1 749 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Cone15ag0602 803 SUPERFAMILY ENTH/VHS domain 6 148 IPR008942 -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 425 445 - -
Cone15ag0602 803 SMART enth_2 24 150 IPR013809 -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 250 269 - -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 181 236 - -
Cone15ag0602 803 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 468 488 - -
Cone15ag0602 803 Pfam ENTH domain 25 146 IPR013809 -
Cone15ag0602 803 MobiDBLite consensus disorder prediction 157 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0602 K12471 - - mdm:103449751 743.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0602 Cone-Chr15:3094836 Cone4ag1645 Cone-Chr4:12414029 5.09E-62 dispersed
Cone11ag0628 Cone-Chr11:3988650 Cone15ag0602 Cone-Chr15:3094836 2.91E-191 wgd
Cone14ag0589 Cone-Chr14:2922959 Cone15ag0602 Cone-Chr15:3094836 0 wgd
Cone15ag0602 Cone-Chr15:3094836 Cone18ag0876 Cone-Chr18:6150965 1.61E-204 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53