Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0616 ATGTTGCAGCCTGGGTATGATATTAACGAGCTTTACCAAGAAGCTCAAACCCGTTGGTTGAAGCCTTCAGAAGTGCACTTTATTTTAGAGAATCATGACAAGTACCAGCTGACTGAGGAGGCCCCAAAACAGCCAACAAGTGGATCTCTGTTTCTTTTTAACAAGCGAGTGCTCCGTTTTTTCCGTAAAGATGGTCACAACTGGCGAAAGAAAAAGGATGGAAGAACTGTTGGTGAAGCACATGAAAGGCTTAAGGTTGGAAATATTGAAACTCTAAACTGTTACTATGCACATGGAGAGGAGAACCCCAATTTTCAGAGACGTAGCTATTGGATATTGGACCCGTCATCGGATCACATTGTTCTTGTGCATTATAGAGATATTAGTGAGGGTAAGTCTGTGTCTGGATGTGTTCCCCAATCATCTCCAGGATCCTCTTCTGGTTTCGTTCAGAGCCCCGCATCATATTCTAATCAAATTCTGAGCTCTAGTTCTGAACATCAACATAATTTATTGAGTCCTGGACCTGTTGAAGTTAGTTCTGAGATAGCTAACAGTAGTAATGGGGTAGATGGCTCTGAGAGACTCGATGGAACAGCTGAAGTGGTAAATTCGGATGGGCTTGCTGTTTCTCAAGCTTTACGAAGAATTGAGGAACAATTAAGTTTGAATGATGACAGCCTTAAAGATGTCGGTCTATTTTATCGTCAAGATGAATATATAAATGATTCTCATGTTTACAATGGGGAGATATCCAACAGCAATCACTTTGCGACTTTTCAGGAATCAGATAGTACTGTGCAAAAACAACTTTATGGACATTCTTTGATGCAAGGTGATGAGGGTGACCATCATCATGAAGCACTGGTTCATGACACTGCTTTTGAACGTAAAGAATCTTTATCATGGAAAGAGGTTCTGGAGTCGTGTAAGACTTCATCAGGTCATGGGTCTCGTGAGAAAGAATCTTCAGCATATGAATATGGAAAGCCGCTATTTTCTTCAGGAAAAGTTACAGATGAAGAGTGTGAGAACCATTATTGGTTTGATTCTGGAGGAAATGCTGCAGAAAATTCGTCTCTATTTCTTGAGAGCCACAAGTTTCCAGCATATTCTTCGGTGATAGGAACTCATGACATCAGTACTGAATACCGTTCAATGTTTTTAGACCAAGGCCAAGGAATTCCCCTTGAATCAGATGCAAGTTTGACAATTGCACTGAAGCAGAAATTTACGATCCATGAAATATCACCGGAGTGGGGTTATGCCACTGAGTCTACAAAGGTTATCATTGTTGGTTCTTTTCTCTGTGATCCATCAGAATCCTCATGGGCTTGCATGTTTGGTGATATCGAAGTTCCTCTTCAGATTGTTCAGGATGGTGTTGTCCGCTGTGAAGCTCCTCCACACCTTCCTGGGAAGGTGACTCTCTGCATTACTGCCTCCAATAGAGAGTCTTGCAGTGAAGTAAGAGAATTCAATTATCGAGCTAGCAATACTGTCTGTACTCGCTGTAATTCATCTTCAATAGAGGCTACTAAGAGCCCAGAAGAGTTGTTATTACTTGTCAGGCTCACCCAGATGCTTCTGACTGACTCGTCAACCCGGAAAGGTGAGCATGGAGATGAACATTTGAGAAAACTGAGAGATAATGATGATTCTTGGAGTTATGTGATCGGGACTCTTTTAGTTGACATTGGAACTTCTTCCAATACCATTTATTTTCTTCTGGAAGAACTTCTAAAAGACAGGTTACAACAGTGGCTTTCTTCCAGAACTGAGGTTGAAGATGATCAGAATGGCTGTTTCTTGTCCAAGAAAGATCAAAGCATAATACATTTGGTTGCTGGACTAGGTTTTGAGTGGGCCTTAAACCCAATTCTCAGTTGTGGAGTTAGTGTAGATTTCCGTGACATTACTGGGTGGACTGCTCTACATTGGGCTTCACGCTTTGGAAGGGAGAAAATGGTTGCTGCCCTTATAGCTTCCGGTGCATCAGCTGGGGCAGTGACAGATCCAAGTAATCAAGACCCAAATGGTAAAACACCCGCCTCAATTGCAGCATCTAGTGGCCACAAAGGTCTCGCCGGTTATCTCTCAGAGGTTGCACTAACTAGCCATCTATCATCCCTCACACTCGTGGAAAGCGAGTTTTCCAAAGGCTCTGCGGAGGTAGAAGCAGAAAGAACAGTAAATAGCATCTCAAATGCGAACAGCCTCTCTTCCAATGAGGATCAGCTCTCTCTTAAGGATACACTGGCTGCTGTTAGGAACGCTTCTCAGGCTGCTGCTCGAATTCAATCTGCATTTCGGGCACATTCTTTCAGAAGGCGACAAGAAAGAGACTCAAGTAGAGATGAGTATGGAATTGATTCAAATGACCTTCAAGGCCTCTCTGCTATCTCAAAGCTATCCTTTCGCAACTCAAGGGAGCACAACACAGCTGCTCTATCCATTCAAAAGAAGTTTCGAGGTTGGAAGGGTCGAAAAGATTTCTTATCATTCCGCCAGAAAGTTGTAAAGATTCAGGCTCATGTGAGGGGTTATCAGGTTAGGAAGCATTACAAAGTGATCTGTTGGGCAGTTGGGATTCTTGATAAGGTTGTGCTGAGGTGGAGAAGGAAAGGAGTTGGTTTAAGAGGCTTTAGGCATGAGACAGAGTCGATTGATGAAAGTGAAGATGAAGACATTATCAAGGTGTTCCGTAAACAGAATGTGGAAGGAGCGATAGATGAAGCTGTCTCAAGGGTCCTGTCCATGGCGGAATCTCCAGAGGCTCGTCAGCAATATAGTCGCATGCTTGAAAGATATCGCCAAGCTAAGGCTGAACTTATTGGCTCCGGTGGTGAAGCAGTTGCATCAAATTCTCTTGGTGATGTTTATCAAATGGAAGATGACGATATATATCCGATAATATAG 2919 42.86 MLQPGYDINELYQEAQTRWLKPSEVHFILENHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNIETLNCYYAHGEENPNFQRRSYWILDPSSDHIVLVHYRDISEGKSVSGCVPQSSPGSSSGFVQSPASYSNQILSSSSEHQHNLLSPGPVEVSSEIANSSNGVDGSERLDGTAEVVNSDGLAVSQALRRIEEQLSLNDDSLKDVGLFYRQDEYINDSHVYNGEISNSNHFATFQESDSTVQKQLYGHSLMQGDEGDHHHEALVHDTAFERKESLSWKEVLESCKTSSGHGSREKESSAYEYGKPLFSSGKVTDEECENHYWFDSGGNAAENSSLFLESHKFPAYSSVIGTHDISTEYRSMFLDQGQGIPLESDASLTIALKQKFTIHEISPEWGYATESTKVIIVGSFLCDPSESSWACMFGDIEVPLQIVQDGVVRCEAPPHLPGKVTLCITASNRESCSEVREFNYRASNTVCTRCNSSSIEATKSPEELLLLVRLTQMLLTDSSTRKGEHGDEHLRKLRDNDDSWSYVIGTLLVDIGTSSNTIYFLLEELLKDRLQQWLSSRTEVEDDQNGCFLSKKDQSIIHLVAGLGFEWALNPILSCGVSVDFRDITGWTALHWASRFGREKMVAALIASGASAGAVTDPSNQDPNGKTPASIAASSGHKGLAGYLSEVALTSHLSSLTLVESEFSKGSAEVEAERTVNSISNANSLSSNEDQLSLKDTLAAVRNASQAAARIQSAFRAHSFRRRQERDSSRDEYGIDSNDLQGLSAISKLSFRNSREHNTAALSIQKKFRGWKGRKDFLSFRQKVVKIQAHVRGYQVRKHYKVICWAVGILDKVVLRWRRKGVGLRGFRHETESIDESEDEDIIKVFRKQNVEGAIDEAVSRVLSMAESPEARQQYSRMLERYRQAKAELIGSGGEAVASNSLGDVYQMEDDDIYPII 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3199290 3216191 + Conep15aG0062900.1 Cone15ag0616 453744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0616 972 CDD IPT 412 496 - -
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 759 787 - -
Cone15ag0616 972 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 MobiDBLite consensus disorder prediction 668 688 - -
Cone15ag0616 972 SMART ANK_2a 640 669 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 SMART ANK_2a 679 708 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 Gene3D - 811 859 - -
Cone15ag0616 972 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Cone15ag0616 972 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 395 940 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 812 841 - -
Cone15ag0616 972 Pfam IPT/TIG domain 412 484 IPR002909 -
Cone15ag0616 972 SUPERFAMILY Ankyrin repeat 605 701 IPR036770 -
Cone15ag0616 972 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 SUPERFAMILY E set domains 412 496 IPR014756 -
Cone15ag0616 972 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 SMART iq_5 758 780 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 836 859 - -
Cone15ag0616 972 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 MobiDBLite consensus disorder prediction 668 686 - -
Cone15ag0616 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 863 IPR027417 -
Cone15ag0616 972 Gene3D - 576 709 IPR036770 -
Cone15ag0616 972 Gene3D Immunoglobulins 406 500 IPR013783 -
Cone15ag0616 972 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Cone15ag0616 972 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 Pfam IQ calmodulin-binding motif 815 832 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 Pfam Ankyrin repeats (3 copies) 613 700 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 FunFam Calmodulin-binding transcription activator 2 406 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0616 K21596 - - rcu:8286780 1147.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0616 Cone-Chr15:3199290 Cone15ag0697 Cone-Chr15:3763965 4.60E-138 dispersed
Cone14ag0727 Cone-Chr14:4023379 Cone15ag0616 Cone-Chr15:3199290 4.03E-114 transposed
Cone14ag0610 Cone-Chr14:3037789 Cone15ag0616 Cone-Chr15:3199290 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44863 PF00069 Pkinase 1.70E-69 CL0016 Cone TF