Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0616 ATGTTGCAGCCTGGGTATGATATTAACGAGCTTTACCAAGAAGCTCAAACCCGTTGGTTGAAGCCTTCAGAAGTGCACTTTATTTTAGAGAATCATGACAAGTACCAGCTGACTGAGGAGGCCCCAAAACAGCCAACAAGTGGATCTCTGTTTCTTTTTAACAAGCGAGTGCTCCGTTTTTTCCGTAAAGATGGTCACAACTGGCGAAAGAAAAAGGATGGAAGAACTGTTGGTGAAGCACATGAAAGGCTTAAGGTTGGAAATATTGAAACTCTAAACTGTTACTATGCACATGGAGAGGAGAACCCCAATTTTCAGAGACGTAGCTATTGGATATTGGACCCGTCATCGGATCACATTGTTCTTGTGCATTATAGAGATATTAGTGAGGGTAAGTCTGTGTCTGGATGTGTTCCCCAATCATCTCCAGGATCCTCTTCTGGTTTCGTTCAGAGCCCCGCATCATATTCTAATCAAATTCTGAGCTCTAGTTCTGAACATCAACATAATTTATTGAGTCCTGGACCTGTTGAAGTTAGTTCTGAGATAGCTAACAGTAGTAATGGGGTAGATGGCTCTGAGAGACTCGATGGAACAGCTGAAGTGGTAAATTCGGATGGGCTTGCTGTTTCTCAAGCTTTACGAAGAATTGAGGAACAATTAAGTTTGAATGATGACAGCCTTAAAGATGTCGGTCTATTTTATCGTCAAGATGAATATATAAATGATTCTCATGTTTACAATGGGGAGATATCCAACAGCAATCACTTTGCGACTTTTCAGGAATCAGATAGTACTGTGCAAAAACAACTTTATGGACATTCTTTGATGCAAGGTGATGAGGGTGACCATCATCATGAAGCACTGGTTCATGACACTGCTTTTGAACGTAAAGAATCTTTATCATGGAAAGAGGTTCTGGAGTCGTGTAAGACTTCATCAGGTCATGGGTCTCGTGAGAAAGAATCTTCAGCATATGAATATGGAAAGCCGCTATTTTCTTCAGGAAAAGTTACAGATGAAGAGTGTGAGAACCATTATTGGTTTGATTCTGGAGGAAATGCTGCAGAAAATTCGTCTCTATTTCTTGAGAGCCACAAGTTTCCAGCATATTCTTCGGTGATAGGAACTCATGACATCAGTACTGAATACCGTTCAATGTTTTTAGACCAAGGCCAAGGAATTCCCCTTGAATCAGATGCAAGTTTGACAATTGCACTGAAGCAGAAATTTACGATCCATGAAATATCACCGGAGTGGGGTTATGCCACTGAGTCTACAAAGGTTATCATTGTTGGTTCTTTTCTCTGTGATCCATCAGAATCCTCATGGGCTTGCATGTTTGGTGATATCGAAGTTCCTCTTCAGATTGTTCAGGATGGTGTTGTCCGCTGTGAAGCTCCTCCACACCTTCCTGGGAAGGTGACTCTCTGCATTACTGCCTCCAATAGAGAGTCTTGCAGTGAAGTAAGAGAATTCAATTATCGAGCTAGCAATACTGTCTGTACTCGCTGTAATTCATCTTCAATAGAGGCTACTAAGAGCCCAGAAGAGTTGTTATTACTTGTCAGGCTCACCCAGATGCTTCTGACTGACTCGTCAACCCGGAAAGGTGAGCATGGAGATGAACATTTGAGAAAACTGAGAGATAATGATGATTCTTGGAGTTATGTGATCGGGACTCTTTTAGTTGACATTGGAACTTCTTCCAATACCATTTATTTTCTTCTGGAAGAACTTCTAAAAGACAGGTTACAACAGTGGCTTTCTTCCAGAACTGAGGTTGAAGATGATCAGAATGGCTGTTTCTTGTCCAAGAAAGATCAAAGCATAATACATTTGGTTGCTGGACTAGGTTTTGAGTGGGCCTTAAACCCAATTCTCAGTTGTGGAGTTAGTGTAGATTTCCGTGACATTACTGGGTGGACTGCTCTACATTGGGCTTCACGCTTTGGAAGGGAGAAAATGGTTGCTGCCCTTATAGCTTCCGGTGCATCAGCTGGGGCAGTGACAGATCCAAGTAATCAAGACCCAAATGGTAAAACACCCGCCTCAATTGCAGCATCTAGTGGCCACAAAGGTCTCGCCGGTTATCTCTCAGAGGTTGCACTAACTAGCCATCTATCATCCCTCACACTCGTGGAAAGCGAGTTTTCCAAAGGCTCTGCGGAGGTAGAAGCAGAAAGAACAGTAAATAGCATCTCAAATGCGAACAGCCTCTCTTCCAATGAGGATCAGCTCTCTCTTAAGGATACACTGGCTGCTGTTAGGAACGCTTCTCAGGCTGCTGCTCGAATTCAATCTGCATTTCGGGCACATTCTTTCAGAAGGCGACAAGAAAGAGACTCAAGTAGAGATGAGTATGGAATTGATTCAAATGACCTTCAAGGCCTCTCTGCTATCTCAAAGCTATCCTTTCGCAACTCAAGGGAGCACAACACAGCTGCTCTATCCATTCAAAAGAAGTTTCGAGGTTGGAAGGGTCGAAAAGATTTCTTATCATTCCGCCAGAAAGTTGTAAAGATTCAGGCTCATGTGAGGGGTTATCAGGTTAGGAAGCATTACAAAGTGATCTGTTGGGCAGTTGGGATTCTTGATAAGGTTGTGCTGAGGTGGAGAAGGAAAGGAGTTGGTTTAAGAGGCTTTAGGCATGAGACAGAGTCGATTGATGAAAGTGAAGATGAAGACATTATCAAGGTGTTCCGTAAACAGAATGTGGAAGGAGCGATAGATGAAGCTGTCTCAAGGGTCCTGTCCATGGCGGAATCTCCAGAGGCTCGTCAGCAATATAGTCGCATGCTTGAAAGATATCGCCAAGCTAAGGCTGAACTTATTGGCTCCGGTGGTGAAGCAGTTGCATCAAATTCTCTTGGTGATGTTTATCAAATGGAAGATGACGATATATATCCGATAATATAG 2919 42.86 MLQPGYDINELYQEAQTRWLKPSEVHFILENHDKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNIETLNCYYAHGEENPNFQRRSYWILDPSSDHIVLVHYRDISEGKSVSGCVPQSSPGSSSGFVQSPASYSNQILSSSSEHQHNLLSPGPVEVSSEIANSSNGVDGSERLDGTAEVVNSDGLAVSQALRRIEEQLSLNDDSLKDVGLFYRQDEYINDSHVYNGEISNSNHFATFQESDSTVQKQLYGHSLMQGDEGDHHHEALVHDTAFERKESLSWKEVLESCKTSSGHGSREKESSAYEYGKPLFSSGKVTDEECENHYWFDSGGNAAENSSLFLESHKFPAYSSVIGTHDISTEYRSMFLDQGQGIPLESDASLTIALKQKFTIHEISPEWGYATESTKVIIVGSFLCDPSESSWACMFGDIEVPLQIVQDGVVRCEAPPHLPGKVTLCITASNRESCSEVREFNYRASNTVCTRCNSSSIEATKSPEELLLLVRLTQMLLTDSSTRKGEHGDEHLRKLRDNDDSWSYVIGTLLVDIGTSSNTIYFLLEELLKDRLQQWLSSRTEVEDDQNGCFLSKKDQSIIHLVAGLGFEWALNPILSCGVSVDFRDITGWTALHWASRFGREKMVAALIASGASAGAVTDPSNQDPNGKTPASIAASSGHKGLAGYLSEVALTSHLSSLTLVESEFSKGSAEVEAERTVNSISNANSLSSNEDQLSLKDTLAAVRNASQAAARIQSAFRAHSFRRRQERDSSRDEYGIDSNDLQGLSAISKLSFRNSREHNTAALSIQKKFRGWKGRKDFLSFRQKVVKIQAHVRGYQVRKHYKVICWAVGILDKVVLRWRRKGVGLRGFRHETESIDESEDEDIIKVFRKQNVEGAIDEAVSRVLSMAESPEARQQYSRMLERYRQAKAELIGSGGEAVASNSLGDVYQMEDDDIYPII 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3199290 3216191 + Conep15aG0062900.1 Cone15ag0616 453744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0616 972 CDD IPT 412 496 - -
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 759 787 - -
Cone15ag0616 972 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 MobiDBLite consensus disorder prediction 668 688 - -
Cone15ag0616 972 SMART ANK_2a 640 669 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 SMART ANK_2a 679 708 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 Gene3D - 811 859 - -
Cone15ag0616 972 ProSiteProfiles Ankyrin repeat region circular profile. 640 666 - -
Cone15ag0616 972 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 395 940 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 812 841 - -
Cone15ag0616 972 Pfam IPT/TIG domain 412 484 IPR002909 -
Cone15ag0616 972 SUPERFAMILY Ankyrin repeat 605 701 IPR036770 -
Cone15ag0616 972 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cone15ag0616 972 SUPERFAMILY E set domains 412 496 IPR014756 -
Cone15ag0616 972 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 SMART iq_5 758 780 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 ProSiteProfiles IQ motif profile. 836 859 - -
Cone15ag0616 972 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 MobiDBLite consensus disorder prediction 668 686 - -
Cone15ag0616 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 863 IPR027417 -
Cone15ag0616 972 Gene3D - 576 709 IPR036770 -
Cone15ag0616 972 Gene3D Immunoglobulins 406 500 IPR013783 -
Cone15ag0616 972 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Cone15ag0616 972 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 Pfam IQ calmodulin-binding motif 815 832 IPR000048 GO:0005515(InterPro)
Cone15ag0616 972 Pfam Ankyrin repeats (3 copies) 613 700 IPR002110 GO:0005515(InterPro)
Cone15ag0616 972 FunFam Calmodulin-binding transcription activator 2 406 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0616 Cone-Chr15:3199290 Cone15ag0697 Cone-Chr15:3763965 4.60E-138 dispersed
Cone14ag0727 Cone-Chr14:4023379 Cone15ag0616 Cone-Chr15:3199290 4.03E-114 transposed
Cone14ag0610 Cone-Chr14:3037789 Cone15ag0616 Cone-Chr15:3199290 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44863 PF00069 Pkinase 1.70E-69 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0616 K21596 - rcu:8286780 1147.88