Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone15ag0619 | ATGAGTTTGCTTCATGTATTTGGGTTTGGATTAAAGCTAGGGCATCTAATCTGGATGCTATGTTATTGGATTATATCATTGATTTCCATGAACTGGTTCATTAATGGTGGGATTATGGAAAGCAAGAAGAAGACTCCGCCCCTATGGTATGAATTATGGGACAAAATCACGGCCCGGAACAACACTACTCGAAAAATCCACCACCATCATCAATATTATCAGTATATGGGGTCCAAGAGGGTGAGGAAAACATGGTGGGGGAAGTTTCTAGTTGCTTGGTTGCTTGGATGGAGCTTAGTATCTCTATGGATCTTTTGGTACATGAATTCTCAAGCTATAGAGAAGCGGAAAGAGACTCTTGCGAGCATGTGCGACGAACGGGCTAGGATGTTACAAGACCAGTTTAATGTGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCAACCTTCCATCATGGCAAAAACCCATCCGCTATTGATCAGAGTACTTTTGCGAGGTATACGGAACGAACTGCTTTTGAGAGGCCCCTAACGAGCGGGGTAGCGTATGCTGTGAGGGTACTTCATGATGAAAGAGAACAATTCGAGAGGCAACAAGGATGGACTATTAAGAGGATGGATACATTTGAACAAAACCCAGTTCATGAAGATGACTATGCACCAGACGCTTGTGAGCCGTCTCCAGTTGAGGAAGAATATGCTCCCGTTATCTTTGCGCAAGATACAATTTCGCACGTTGTTTCACTTGATATGTTGTCTGGGAAGGAGGACCGTGAAAATGTGTTGCGTGCAAGAGCATCAGGAAAGGGGGTTCTAACGGCTCCTTTCAAGCTACTCAAAACAAACCGGCTCGGAGTTATATTAACATTTGCTGTCTACAAGACCGATCTTTCTTCAAATGCTACACCAAATGAGAGGATTCAAGCAACTGATGGGTATCTTGGCGGGGTTTTTGATATCGAGTCACTTGTTGAGAAATTACTCCATCAGCTTGCAAGCAAGCAAACCATCCTTGTAAATGTTTATGACACGACCAATCACTCCCATCCAATCAGCATGTACGGTTCAAATGTATCGGATGATGGGTTGCAACATGTTAGCAGCCTTAACTTTGGAGATCCATTTAGAAAGCATGAGATGTGTTGCAGATTTAAGCACAAACCGCCTTGGCCATGGCTAGCTATAACAACTTCAATTGGCATATACATCATTGCACTGCTTGTTGGGCATATATTTCATGCAACCTTGAATCGAATTGCCAAAGTCGAAGATGATTATCATGAGATGATGGAGCTCAAGAAACGGGCAGAAGCTGCTGATGTGGCCAAATCTCAGTTCCTTGCTACCGTCTCCCATGAGATCCGGACCCCAATGAATGGTGTACTCGGGATGTTGCATATGCTTATGGACACAGAGCTGGATGTTACACAGCAGGATTTTGTTAGAACAGCACAGGGAAGTGGAAAAGCTTTAGTCTCACTTATTAATGAGGTTTTGGACCAGGCAAAGATAGAATCTGGTAAGCTTGAACTCGAAGCCGTGCAGTTTGATCTCCGAGCTATTTTGGATGATGTCCTATCTCTCTTTTCGGGGAAGTCTCAAGAAAAAGGAATAGAGTTGGCGGTTTACATATCTGATCGTGTTCCGGAGATGTTAATTGGTGATCCGGGAAGGTTCCGTCAAATCATTACTAATCTCATGGGAAACTCTATCAAATTTACAGATAAAGGACACATCTTTGTCACAGTCCATCTGATCGAGGAGATGATGGACTCAATCGAAGCTGAGACCGAATCATCCTCAAAGAACACCTTAAGTGATTACCCAGTTGCAAATAGATGGCAGAGCTGGGCCGGGTTCAGGGCATTTGGTAGTCAAGAAGGGCCCACTTCTCCTCCCACATTACCCGACCTCATCAATTTAATTGTATCTGTTGAGGATACAGGTGTCGGGATCCCATTGGAAGCTCAATCCCGCATTTTTACTCCTTTCATGCAGGTACGGCCCTCTATTTCCCGAACATATGGGGGAACAGGCATTGGCTTGAGTATTAGCAAGTGCTTAGTTAATCTCATGAAAGGCGAAATAGGGTTTGTGAGCGTACCTAAGATTGGATCCACTTTTACATTTACGGCCGTCTTCACTAACGGCTTCTCCTCCAATTCAAATGAGTACAAGACCCAAAAGATCAATGACCCATCTAACTCTGCGTCTACAGAATTTAAAGGTATGACGGCATTACTTGTGGACCATAGAACGGTCCGAGCCGAGGTGTCAAGGTATCATATCCAACGGCTGGGAATTCATGTTGAATTGGTTCATGATTTCATTCAAGGTGTATCTAGCATAAGCAATGCCAGGATACCTATAAACATGGTCCTTGTAGAACAAGAGATTTGGGATCAAGATCCAGACATTTCCGCTCACTTCTTCAATAACTTGAGAAAAAGTCTGGATGATGGGAACATTACTCCTCCAAAATTATTCCTTCTAACTAACTCTATTAGCCCGTTTTCAAAAGCAAGCCTTGTTCTTTCCAATGTTGTTTCCCCAACGGTGATCACAAAACCGCTCAGGGCAAGTATGCTTGCTGCTTCACTGCAACGGGCTATGGGGGTAGGAAACAAGAGTAGTCATCGGAACGGAGAGGTACCAAGTCTCACTCTCCGGACTCTTCTTCTTGGGAGGAAGATTCTTATCGTGGATGATAATAATGTGAATCTTAGAGTTGCAGCGGGTGCTTTGAAAAAGTACGGAGCTGATGTTGTTTGTGCAGATAGTGGGAAAAAGGCAATCTCATTACTTAAACCACCCCACAATTTCGATGCTTGCTTCATGGATATACAAATGCCGGAAATGGACGGGTTTGAAGCTACGAAAAGGATTCGGGATATTGAACACGAAATCAATAATAACCGAAATCAAGTGGGAGAAGTATCCTCATCAGTGGGGCCTGATGAAAATATTTCAAACCGGCATCTGCCAATCTTGGCCATGACAGCAGATGTAATCCAGGCCACACATGAGGAGTGCTTGCGGTGTGGAATGGATGGATATGTTTCAAAACCTTTTGAAGCTGAACAACTCTATCGTGAAGTTTCTCGCTTTTTCCATTCACCTCCAAGTGGGAGTTTATAG | 3144 | 43.67 | MSLLHVFGFGLKLGHLIWMLCYWIISLISMNWFINGGIMESKKKTPPLWYELWDKITARNNTTRKIHHHHQYYQYMGSKRVRKTWWGKFLVAWLLGWSLVSLWIFWYMNSQAIEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQSTFARYTERTAFERPLTSGVAYAVRVLHDEREQFERQQGWTIKRMDTFEQNPVHEDDYAPDACEPSPVEEEYAPVIFAQDTISHVVSLDMLSGKEDRENVLRARASGKGVLTAPFKLLKTNRLGVILTFAVYKTDLSSNATPNERIQATDGYLGGVFDIESLVEKLLHQLASKQTILVNVYDTTNHSHPISMYGSNVSDDGLQHVSSLNFGDPFRKHEMCCRFKHKPPWPWLAITTSIGIYIIALLVGHIFHATLNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDFVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVQFDLRAILDDVLSLFSGKSQEKGIELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEMMDSIEAETESSSKNTLSDYPVANRWQSWAGFRAFGSQEGPTSPPTLPDLINLIVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTYGGTGIGLSISKCLVNLMKGEIGFVSVPKIGSTFTFTAVFTNGFSSNSNEYKTQKINDPSNSASTEFKGMTALLVDHRTVRAEVSRYHIQRLGIHVELVHDFIQGVSSISNARIPINMVLVEQEIWDQDPDISAHFFNNLRKSLDDGNITPPKLFLLTNSISPFSKASLVLSNVVSPTVITKPLRASMLAASLQRAMGVGNKSSHRNGEVPSLTLRTLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCADSGKKAISLLKPPHNFDACFMDIQMPEMDGFEATKRIRDIEHEINNNRNQVGEVSSSVGPDENISNRHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFHSPPSGSL | 1047 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 3222099 | 3228025 | - | Conep15aG0063200.1 | Cone15ag0619 | 453747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone15ag0619 | 1047 | SMART | HKATPase_4 | 556 | 718 | IPR003594 | - | |
Cone15ag0619 | 1047 | Gene3D | - | 895 | 1041 | - | - | |
Cone15ag0619 | 1047 | CDD | HATPase_EvgS-ArcB-TorS-like | 561 | 716 | - | - | |
Cone15ag0619 | 1047 | ProSiteProfiles | Response regulatory domain profile. | 747 | 873 | IPR001789 | GO:0000160(InterPro) | |
Cone15ag0619 | 1047 | ProSiteProfiles | CHASE domain profile. | 157 | 383 | IPR006189 | - | |
Cone15ag0619 | 1047 | Gene3D | - | 508 | 718 | IPR036890 | - | |
Cone15ag0619 | 1047 | SUPERFAMILY | CheY-like | 897 | 1039 | IPR011006 | - | |
Cone15ag0619 | 1047 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 498 | 713 | IPR036890 | - | |
Cone15ag0619 | 1047 | Pfam | CHASE domain | 160 | 356 | IPR006189 | - | |
Cone15ag0619 | 1047 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 83 | 1038 | IPR050956 | - | |
Cone15ag0619 | 1047 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 429 | 510 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone15ag0619 | 1047 | CDD | HisKA | 444 | 505 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone15ag0619 | 1047 | SUPERFAMILY | CheY-like | 742 | 874 | IPR011006 | - | |
Cone15ag0619 | 1047 | PRINTS | Bacterial sensor protein C-terminal signature | 661 | 671 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone15ag0619 | 1047 | PRINTS | Bacterial sensor protein C-terminal signature | 643 | 657 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone15ag0619 | 1047 | PRINTS | Bacterial sensor protein C-terminal signature | 678 | 696 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Cone15ag0619 | 1047 | ProSiteProfiles | Histidine kinase domain profile. | 451 | 718 | IPR005467 | - | |
Cone15ag0619 | 1047 | CDD | PRTases_typeI | 843 | 927 | IPR000836 | - | |
Cone15ag0619 | 1047 | Gene3D | - | 108 | 160 | - | - | |
Cone15ag0619 | 1047 | Pfam | His Kinase A (phospho-acceptor) domain | 444 | 509 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone15ag0619 | 1047 | Coils | Coil | 421 | 441 | - | - | |
Cone15ag0619 | 1047 | SMART | HisKA_10 | 444 | 509 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Cone15ag0619 | 1047 | SMART | REC_2 | 898 | 1035 | IPR001789 | GO:0000160(InterPro) | |
Cone15ag0619 | 1047 | Gene3D | CHASE domain | 161 | 390 | IPR042240 | - | |
Cone15ag0619 | 1047 | ProSiteProfiles | Response regulatory domain profile. | 899 | 1039 | IPR001789 | GO:0000160(InterPro) | |
Cone15ag0619 | 1047 | Pfam | Response regulator receiver domain | 900 | 970 | IPR001789 | GO:0000160(InterPro) | |
Cone15ag0619 | 1047 | Gene3D | - | 412 | 507 | - | - | |
Cone15ag0619 | 1047 | FunFam | Histidine kinase 4 | 161 | 390 | - | - | |
Cone15ag0619 | 1047 | CDD | REC_hyHK_CKI1_RcsC-like | 900 | 1035 | - | - | |
Cone15ag0619 | 1047 | SMART | CHASE_2 | 157 | 358 | IPR006189 | - | |
Cone15ag0619 | 1047 | FunFam | Histidine kinase 4 | 416 | 507 | - | - | |
Cone15ag0619 | 1047 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 642 | 714 | IPR003594 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1329 | Cone-Chr12:10018207 | Cone15ag0619 | Cone-Chr15:3222099 | 0 | dispersed | |
Cone15ag0619 | Cone-Chr15:3222099 | Cone8ag1386 | Cone-Chr8:10973791 | 0 | dispersed | |
Cone14ag0613 | Cone-Chr14:3053568 | Cone15ag0619 | Cone-Chr15:3222099 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44864 | PF05030 | SSXT | 1.90E-23 | No_clan | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone15ag0619 | K14489 | - | mdm:103452158 | 1603.19 |