Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0625 ATGCAGGTTGAAGCTGTGCTCCATTTGCTTCTGCCGTCATGGTGGGAGATCAAAGTCACAGTCGCTACCTCCATTTTCGTGATCCTGTGGTATTGGTTTTCCACTTATCGAAGCGGAGAAGATGTGGTTGATCACTCGCTCGACAATAACTCTGTTAACACCAGGCGTGCCAATGCCATTGACGATCCTGTTAAGGTGGGCCAGTTAAAAGGGTACCTTCAAACTAGTTCTTATAAAATTAAGGTGAAATTGTTGGCAGCCAAGAACCTTATTGGTGCAAACTTAAATGGAACTTCTGATCCGTATGCCATTATTACTTGTGGCACAGTCAAGCGTTTCAGTTCAATGGTTCCTGGTTCAAGAAATCCCATGTGGGGAGAGGAGTTCATTTTTTTTGCTGATGAGCTCCCTGTCCAGATTAATGTGGCGATATATGATTGGGATATAGTCTGGAAAAGTACTCTTCTTGGTTTGGCAACTATTCCAGTTGAATGTGAAGGCCAAATGGTTGCAGATTGGTACACATTGGATAACACATCTGGGCATGTTTGTCTAGATATCAAGACAACAAAATATGCTGCAAATTCTATGAGGATTACAAATGGCTACTCTGAGACTAATACTCGGAGAAGAATTTCGTTGGACAGAAAAGGGCCAACTATGGTTCTTCAGAAGCCAGGCCCGCTTCAGATGATATTTGAGCTTCTTCCTGATGAGGTTGTCAAACATAGCTATTCTTGTGCTCTCGAGAGGTCGTTCCTTTATCATGGACGCATTTATGTCTCTGCATGGCATATTTGCTTCCATTCTAATGTCTTCTCTAAGAAAATGAAGGTGCTAATACAATTTGAAGACATAGATGAGATAAGGAGGAGTAACCATGCATTTATCAATCCTGCTATAACCATTATTCTTCGTGTGGGTGCTGGTGGGCATGGTGTGCCTCCTCTGGGAAGTTCTGGTGGTAGAGTCAGATACAAATTTGCGTCATTTTGGAACAGGAATCATGTATATAGATCCTTACAACATGCTGTAAAGAACTTCCATTCAAAGCTAGAAGCTGAGAAGAAGGCAAAAGCAGAATTAGCATTACGTGCTCATAGCAATTCCATCCGAGGAAGTAAGAGGCAGACCAAGATTCCTGAAGTTAATGTCCCTGATATTGAAAATATTCAGGCATTTATCAAGGAAGAGGTAGTAGTTAGTATAGATAAGGATATTTTTCCATGCACTGCCGAGCAGTTCTTCAATATATTGTTAAATGATGGATCAAATTTTACAAATGTGCATCATTTAGCACGAAAGAATACTGCTCTTGTAATGGGACATTGGCATGGTACCGACAAATACGGTGGCCAATTGAGGGAGATCACATTCAGATCTCCTTGTAACAGTCCCATGTGCCCACCAGACACAGCTATGACAGAGCTCCAACATTCAGTTTTCTCGTCAGATAAGAAGAAGTTGGTCTATGAGACAGTACAACTGGCACATGACGTTCCATTTGGTTCCTGCTTTGAGGTCCATTGTAGGTGGTCTGTGGAAACTTGTGCGGAGAAATCATGCACTATAGATATAAGGGCGGGTGTGCATTTCAAGAAATGGTGTCTGGTGCAATCAAAAATAAAATCTGGAGCTCTCATCGAGTGCAAGAAAGGAGTGAAGGTGATGGTAGATGCTGGCCGTGAGTATTTAATAAAGTTCAACACTTCCGGTAGTGAGATACGCTCTCTACCCTCTAAGGCACCACCTAAAGCTCCATCAACCTGA 1770 42.2 MQVEAVLHLLLPSWWEIKVTVATSIFVILWYWFSTYRSGEDVVDHSLDNNSVNTRRANAIDDPVKVGQLKGYLQTSSYKIKVKLLAAKNLIGANLNGTSDPYAIITCGTVKRFSSMVPGSRNPMWGEEFIFFADELPVQINVAIYDWDIVWKSTLLGLATIPVECEGQMVADWYTLDNTSGHVCLDIKTTKYAANSMRITNGYSETNTRRRISLDRKGPTMVLQKPGPLQMIFELLPDEVVKHSYSCALERSFLYHGRIYVSAWHICFHSNVFSKKMKVLIQFEDIDEIRRSNHAFINPAITIILRVGAGGHGVPPLGSSGGRVRYKFASFWNRNHVYRSLQHAVKNFHSKLEAEKKAKAELALRAHSNSIRGSKRQTKIPEVNVPDIENIQAFIKEEVVVSIDKDIFPCTAEQFFNILLNDGSNFTNVHHLARKNTALVMGHWHGTDKYGGQLREITFRSPCNSPMCPPDTAMTELQHSVFSSDKKKLVYETVQLAHDVPFGSCFEVHCRWSVETCAEKSCTIDIRAGVHFKKWCLVQSKIKSGALIECKKGVKVMVDAGREYLIKFNTSGSEIRSLPSKAPPKAPST 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3270649 3281146 + Conep15aG0063800.1 Cone15ag0625 453753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0625 589 Pfam C2 domain 79 176 IPR000008 -
Cone15ag0625 589 SMART gram2001c 227 293 IPR004182 -
Cone15ag0625 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 75 188 IPR035892 -
Cone15ag0625 589 Gene3D C2 domain 62 192 IPR035892 -
Cone15ag0625 589 Pfam VAD1 Analog of StAR-related lipid transfer domain 406 547 IPR031968 -
Cone15ag0625 589 ProSiteProfiles C2 domain profile. 65 178 IPR000008 -
Cone15ag0625 589 Pfam GRAM domain 232 299 IPR004182 -
Cone15ag0625 589 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 1 574 IPR044655 -
Cone15ag0625 589 Gene3D - 228 347 IPR011993 -
Cone15ag0625 589 SMART C2_3c 79 185 IPR000008 -
Cone15ag0625 589 CDD C2 80 176 - -
Cone15ag0625 589 ProSiteProfiles VASt domain profile. 396 569 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0625 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0673 Cone-Chr11:4526688 Cone15ag0625 Cone-Chr15:3270649 2.75E-259 transposed
Cone18ag0839 Cone-Chr18:5682765 Cone15ag0625 Cone-Chr15:3270649 1.17E-262 transposed
Cone14ag0618 Cone-Chr14:3097886 Cone15ag0625 Cone-Chr15:3270649 1.53E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1323 . . . . . Bpe14g00790 . . . . . . Car06g01428 Car14g01266 . . . Bhi01g03681 . . . . . . . . . . . . . Cone14ag0618 Cone15ag0625 . Cone11ag0673 . . . . . . . Bda13g00539 . . . . . Cmo06g01677 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003689 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 0 7 2 1 46