Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0627 ATGGATGCGTACAAGTCTTCTCCGTCAGCCATGGCGGCGGTTCTTCTTCTTCTTCTTCTTCTTACAGCACCGCTCCATTTGGTTTCATCGAAGGATCAATCGAGCTCAAGGGAATGCGAGGATCTAAGTTTTACAGGACTCGCCCTCTGTTCTGATTGCAACACTTTGGCTGAATATATCAAAGATCAAGAATTAATATTGGACTGTTTGCAATGCTGTAAAGAAGATTCCGATGATTCCATGAGCAAGATAACTTATTCTGGTGCAGTGCTAGAGGTTTGCATGAGGAAACTGGTTTTCTATCCGGAAATAGTTGGGTTCATAGAAGAGAAGGACCAGTTCCCTTCTGTTAAGCTTCAATACAATTTCAACTCCCCACCGAAGCTGATCATGCTGGACGATGCTGGTCAGCATAAGGAAACTGTAAGAATTGATAATTGGAAAAGGGAACATATTCTTCGGTTCTTGCGGGAGAAGGTTAATTGCTCTTCAGCAGTATGA 501 42.91 MDAYKSSPSAMAAVLLLLLLLTAPLHLVSSKDQSSSRECEDLSFTGLALCSDCNTLAEYIKDQELILDCLQCCKEDSDDSMSKITYSGAVLEVCMRKLVFYPEIVGFIEEKDQFPSVKLQYNFNSPPKLIMLDDAGQHKETVRIDNWKREHILRFLREKVNCSSAV 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3285003 3287342 + Conep15aG0064000.1 Cone15ag0627 453755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0627 166 PANTHER SELENOPROTEIN F 13 161 IPR039992 GO:0005788(PANTHER)|GO:0016491(PANTHER)
Cone15ag0627 166 SUPERFAMILY Thioredoxin-like 72 162 IPR036249 -
Cone15ag0627 166 Pfam Sep15/SelM redox domain 88 160 IPR014912 -
Cone15ag0627 166 Gene3D - 88 160 IPR038219 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0627 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0619 Cone-Chr14:3104329 Cone15ag0627 Cone-Chr15:3285003 1.94E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1322 Blo01g00181 Blo12g00273 Bda03g00962 Bda08g00169 Bpe04g00890 . . Bma05g01153 Cmo08g00190 Cmo17g00602 . . . . . . . . . . . . . . Cla06g00102 Cam06g0113 Cec06g0114 Cco06g0113 Clacu06g0115 Cmu06g0113 Cre06g0883 Cone14ag0619 Cone15ag0627 . . . . . . . . . . Bpe05g00963 . . . Sed09g0394 . . . Cma17g00618 Car08g00169 Car17g00583 . Cpe17g01079 Bhi12g02468 Tan06g1530 Cmetu11g1399 . Hepe03g1100 . . . . . . . . . . . . Cme11g02436
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005925 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39