Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0629 ATGGAATTTAGAATTGCTAGGCGGTCCAACATTCCTCCTGGTCATAATCACAACAAAAGGAGGAGAGGAGGTGTGATCATGGAGGTAGGAAATATGATGGAACACAAAAGATCAGGGCCTTGCGCTAATATTGATGACAATTCTCTCATGTCTCTTACACCGAAACGGCACAAGCCCCATTTCTCTATCTCCTCTAAGGACTCAAAAGAGAAGCTCGGTCAACGAATTGTAGCTTTGCAAGAGCTCGTTTCTCCATTTGGAAAGACGGATACGGCTTCTGTGCTTTTTGAAGCGATGGGGTATATACAGTTCCTTCACGAACAAGTTAAGGTTTTGAGTGCTCCATACCTTCAAAGCTCACCAAAGGCTAAAATGCAGCAATACAGTCTGAGAAGCAGAGGCTTATGTCTTGTTCCGGTTTCTCATACTGTGGGAGTTGCGGGCAGCAATGGGGCCGACATTTGGGCACCTGTCAAAACTACTACTACTTCTAACAAATTCGAGAACAAGACATAA 516 44.38 MEFRIARRSNIPPGHNHNKRRRGGVIMEVGNMMEHKRSGPCANIDDNSLMSLTPKRHKPHFSISSKDSKEKLGQRIVALQELVSPFGKTDTASVLFEAMGYIQFLHEQVKVLSAPYLQSSPKAKMQQYSLRSRGLCLVPVSHTVGVAGSNGADIWAPVKTTTTSNKFENKT 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3296109 3298023 - Conep15aG0064200.1 Cone15ag0629 453757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0629 171 MobiDBLite consensus disorder prediction 1 21 - -
Cone15ag0629 171 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 141 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone15ag0629 171 CDD bHLH_AtbHLH_like 62 113 IPR045239 -
Cone15ag0629 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 121 IPR036638 GO:0046983(InterPro)
Cone15ag0629 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983(InterPro)
Cone15ag0629 171 FunFam Transcription factor bHLH113 family 55 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0629 Cone-Chr15:3296109 Cone8ag1099 Cone-Chr8:9829962 3.63E-31 dispersed
Cone14ag0621 Cone-Chr14:3115120 Cone15ag0629 Cone-Chr15:3296109 1.08E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1321 . Blo12g00272 Bda03g00963 . Bpe04g00891 Bpe14g00789 Bma04g00857 . . . . Cma14g01438 Car06g01427 . . . . Bhi01g03682 . . . . . . . . . . . . . Cone14ag0621 Cone15ag0629 . . . . . . . . . Bda13g00540 . . . . . Cmo06g01675 Cmo14g01474 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003372 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 2 1 1 1 9 1 1 49