Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0635 ATGCCATCTCCGAGCAAATTGAGCAAGCCAGCACATAATGACTCGGACGATGCCGAGACGCCCTCTAACAATCTCTGGGTCGCTAATCTGCCCAACGATGTCACCGATGCGGAACTTATGGATCTTTTCGCCAAGTATGATGCGCTTGACAGCGTGACGTCTTATTCGTCTAGAAGCTACGCCTTCGTCTTCTTCAAGCGCACAGAGGATGCTCAGGCGGCAAAGAACGCTCTGCAAGGGACTGTTCTGCGTGGGAGCTCCCTCAAGATTGAGTTTGCAAGACCGGCAAAACCTGGTAAGCATTTATGGGTAGGTGGAATCAGCCAAACAGTTTTGAAGGAAGAATTGGAAAAAGAGTTTACTAAGTTTGGTAAGATTGAGAATTTTAAGTTCCTGAGAGAACGGAATACTGCATCGGTTGAATATGTTAGATTGGAGGATGCTTCCCAGGCCATGAGACATATGAATGGGAAGCACATAGGGGGTGAACAGATACGTGTGGATTTCTTTCGTTCACAAGCTTCGAGAAGAAATTCCCAATTTTCTGGTGCACTTAGAGGAGAGGGGCAGCCCAGTAATGTTTTATGGATTGGCTATCCCCCTTTGATTCAAGTTGACGAGCAGATGCTTCACAATGCCATGATATTATTTGGTGAGATTGAGAAAATTAAGAGTTTTCCTTCAAGGCACTATTCTTTTGTGGAGTTTAGGAGTATTGATGAAGCACGGCGTGCTAAGGAGGGATTACAGGGCCGGCTTTTCAATGATCCTCGAATTGTTATTATGTTTTCAAGCAGTGAGCTGGCACCTGGAAAAGATTATCCTAGCAACTACTCTAGCAGTGGTATTATAGGAACAAGACCTGAGGTTTTTCTCAGTGAACATCCGTATCGACTTTCCCAAATCGATCCTTTGACCCATAGTCAGTCAATGGTGAACAGTAATATTCCTGGACCACTGCCGATCCGACCAAATATATCAATGAGGGCTTTTGGTGGTCAAGGAAGCTATGAACCTCTTTTGGTGGGACTTGACTATAATGATTTGGCCAGACCTCATAGTCTCCAGAATCGGAATTCCAAAAGTCTTATGAGTTCAACCTGGAGAAGGTCGTCTCCTCCTGCACCTGGATCGCTTTCATCACCACCACCTGGTAGTCGGTCATCAGCAAGATCTTCATCAGGTGCATGGGATGTGTTGGATGTAAACCAATTTGAAAGAGAGCCCAAACGCTTGAGAATAGACGGGACAAGTCGCTTTAGTCCCGTTGGTGTTAGGACCACAGTTCAAGGACCTGGCCGGAGTCATGGTGATGCTGACTTTATGTGGCGTGGCATAATTGCAAAGGGGGGAACTCCAGTTTGTAATGCTCGTTGTGTCCCTGTTGGAGAAGGGATAAGCAGTGAGCTTCCTGAAGTTGTTAATTGTTCTGCCAGAACCGGGTTGGATCAACTCACAAAGCACTATTCTGAAGCAATTGGGTTTGAAATTGTTTTCTTTTTGCCAGACAGTGAGGATGACTTTGCTTCCTATACAGAATTCCTTCGATACTTGGGCTCAAAAGATCGTGCTGGTGTGGCCAAGTTTGATGATGGGACCACATTGTTCTTAGTACCTCCTTCAGATTTCTTAACAGATGTCTTGAAGGTTGCGGGCCCAGAACGCCTATATGGCGTTGTTCTCAAATTTCCGCATATTCCCTCAACCAATGAACCATCACGACAACAATCTCATCTTTCCATTCCTTCACCTCATTATCTGGAGAGACACCAACCAGATTATGGTATGGTCCCCTTGAAAGAAGATTATACAGGAATTCTGCGCAAGGAGACCAAGGTCCCACCTAAACTACTTGTTCCATCCGCAACTGAATTACCTTCATTGCAGTCATCATCCAAAGAATTTACTGCCCCTAATACGACTTCAATCGCTCAATCTGGGGTTTCTTTAACACCAGAACTCATTGCCACACTAGCTTCTTTACTGCCTGGGGCAACACAATCTTCTTCTTTAGAAAGTGCACAGCCTCCATCATATTCTGCCAGACCTCAGTTTCCACCTGTTCTGCCTAATAAAGGGACTCAATCCGAAGGGTGGAAACAAGAACACCAATCTTTTGAACATACAGGCCCATCATTTCAACAAATGGGAACTAGTTTTAATCATCAAGGGCAACCTCATTCACAGTTTCATCAGCCTTATCCATCTTTCCCAAACCCACCCAGCCACTCTGCTCAGTTGGTCAATGAAAGCATGCAAATGCAAGAATCTACTTTCAACCTGCCTCAGCAGGTAGCCATTCCTTCTAGGCCTATGACCAACTATACCAATCCTCCTGAGAATAGGCAAGTTAGTGCTTTGCCCCTGGCTAATCCTCAGTATCAACACGATGTTTCTCATATGACTAAGAGAAGTTATGGGGCAGGGCCAGTCTATGGAATGGATAATTCAGGATATACACCAGTTATACAGCAACCGAATCATTCTTTAACCTTCTCTAACCAAGGCCAGGGTGGTAATTCTTCTGTATCACACAGTACAAGCCAATTAGGAGGTGATAGAGTGAATCTCGAGCCTCTGAAGCAGGTGCAACAATTGCAATCTACACTGCTTGGTTCTAGTGGGTCCACTGAAATTGAGACTGATAAAAATCAACGGTATCAGTCAACCTTACAATTTGCAGCCAGCTTACTGCAACAGATCCAGCAGCAGCAGGCAGCACGGGGGTCAGGGAGTCAATGA 2742 45.22 MPSPSKLSKPAHNDSDDAETPSNNLWVANLPNDVTDAELMDLFAKYDALDSVTSYSSRSYAFVFFKRTEDAQAAKNALQGTVLRGSSLKIEFARPAKPGKHLWVGGISQTVLKEELEKEFTKFGKIENFKFLRERNTASVEYVRLEDASQAMRHMNGKHIGGEQIRVDFFRSQASRRNSQFSGALRGEGQPSNVLWIGYPPLIQVDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRIVIMFSSSELAPGKDYPSNYSSSGIIGTRPEVFLSEHPYRLSQIDPLTHSQSMVNSNIPGPLPIRPNISMRAFGGQGSYEPLLVGLDYNDLARPHSLQNRNSKSLMSSTWRRSSPPAPGSLSSPPPGSRSSARSSSGAWDVLDVNQFEREPKRLRIDGTSRFSPVGVRTTVQGPGRSHGDADFMWRGIIAKGGTPVCNARCVPVGEGISSELPEVVNCSARTGLDQLTKHYSEAIGFEIVFFLPDSEDDFASYTEFLRYLGSKDRAGVAKFDDGTTLFLVPPSDFLTDVLKVAGPERLYGVVLKFPHIPSTNEPSRQQSHLSIPSPHYLERHQPDYGMVPLKEDYTGILRKETKVPPKLLVPSATELPSLQSSSKEFTAPNTTSIAQSGVSLTPELIATLASLLPGATQSSSLESAQPPSYSARPQFPPVLPNKGTQSEGWKQEHQSFEHTGPSFQQMGTSFNHQGQPHSQFHQPYPSFPNPPSHSAQLVNESMQMQESTFNLPQQVAIPSRPMTNYTNPPENRQVSALPLANPQYQHDVSHMTKRSYGAGPVYGMDNSGYTPVIQQPNHSLTFSNQGQGGNSSVSHSTSQLGGDRVNLEPLKQVQQLQSTLLGSSGSTEIETDKNQRYQSTLQFAASLLQQIQQQQAARGSGSQ 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3320285 3329199 + Conep15aG0064800.1 Cone15ag0635 453763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0635 913 SMART rrm1_1 24 91 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 SMART rrm1_1 101 168 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 SMART rrm1_1 194 262 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 MobiDBLite consensus disorder prediction 355 375 - -
Cone15ag0635 913 MobiDBLite consensus disorder prediction 827 853 - -
Cone15ag0635 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 CDD SPOC_FPA-like 442 562 - -
Cone15ag0635 913 CDD RRM_SF 205 262 - -
Cone15ag0635 913 CDD RRM_SF 25 91 - -
Cone15ag0635 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 Gene3D - 97 185 IPR012677 -
Cone15ag0635 913 Pfam SPOC domain 437 562 IPR012921 -
Cone15ag0635 913 MobiDBLite consensus disorder prediction 667 696 - -
Cone15ag0635 913 MobiDBLite consensus disorder prediction 1 24 - -
Cone15ag0635 913 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 266 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 FunFam Flowering time control protein FPA 15 97 - -
Cone15ag0635 913 Pfam RNA recognition motif 102 166 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 Pfam RNA recognition motif 25 88 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 Pfam RNA recognition motif 205 258 IPR000504 GO:0003723(InterPro)
Cone15ag0635 913 SUPERFAMILY RNA-binding domain, RBD 181 266 IPR035979 GO:0003676(InterPro)
Cone15ag0635 913 CDD RRM_SF 102 168 - -
Cone15ag0635 913 Gene3D - 5 96 IPR012677 -
Cone15ag0635 913 SUPERFAMILY RNA-binding domain, RBD 20 171 IPR035979 GO:0003676(InterPro)
Cone15ag0635 913 FunFam flowering time control protein FPA 186 281 - -
Cone15ag0635 913 PANTHER RNA RECOGNITION MOTIF-CONTAINING 190 565 - -
Cone15ag0635 913 Coils Coil 884 904 - -
Cone15ag0635 913 Gene3D - 186 271 IPR012677 -
Cone15ag0635 913 MobiDBLite consensus disorder prediction 355 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0635 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0635 Cone-Chr15:3320285 Cone3ag1268 Cone-Chr3:31502815 5.47E-71 dispersed
Cone14ag0626 Cone-Chr14:3137974 Cone15ag0635 Cone-Chr15:3320285 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1285 . . . . . . . . . . . Cma14g01425 . Car14g01255 . . Cpe03g01198 . . . . . . . . . . . . . . Cone14ag0625 Cone15ag0635 Cone18ag0862 Cone11ag0647 . . . Cme07g01957 . . . . . . . . . . Cmo14g01461 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41