Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0654 ATGGCTTCCATTTCCAACCTCTCTAATCCAACCTCTTCTTCTCTATCGTCTTCTTTCAAACCCAGATCTTCTCAGACCAAGTGCTTGATCAATATCCACCACCCCTTCTCTTATTTTACCGCCAAGCTGTCCTCTTCCAGATTGTCCCTACGATCTAATACAGCTCTATCAGGCTCCCTTGTGGTGAGGTGCTCACAAAATGGTGGAAGTGGAAGCCCAACAAAGAGAACAGTTCTTCACGATCTTTATGAGAAGGAAGGACAGAGTCCTTGGTACGACAACCTTTGCCGTCCCATTACGGACCTTCTTCCTCTTATTGCTAGTGGTGTTAGAGGTGTAACTAGCAACCCAGCAATCTTCCAGAAAGCCATATCCACCTCAAACGCATACAACGATCAATTCAGGGAGCTTGTTAAGGCAGGAAAAGACATAGAAAGTGCATATTGGGAACTTGTGGTGAAGGACATACAAGACGCATGCAAGCTTTTCGAGCCAATTTACGACGAGACTGATGGCGGAGACGGTTATGTATCAGTTGAAGTTTCTCCGAGACTTGCTGATGACACTGTAGGAACAGTTGCTGCTGCAAAATGGCTTCACAAAGTGGTGGATCGGTCCAATGTCTATATTAAGATTCCAGCCACTGCCCCTTGTGTCCCTTCCATTAGGGAAACCATTTCACTTGGCATTAGTGTCAATGTCACACTTATCTTCTCCCTGGCTCGATATGAAGCAGTGATTGATGCTTACTTGGATGGTCTTGAAGCTTCTGGTCTAAGTGACCTCTCCAGAGTTACAAGTGTTGCTTCCTTCTTCGTTAGTCGGGTAGATACCCTTGTCGATAAGTTGCTCGAGAAGATCGGAACTCCAGAAGCCCTTGATTTACGAGGAAAGGCAGCAGTAGCACAAGCTGGGTTGGCCTACAAGCTATACCAGAAGAAATTCTCGGGCCCAAGATGGGAGGCCCTAGTCAAGAAGGGTGCCAAGAAGCAACGACTCCTATGGGCCTCGACCAGTGTTAAGAATCCGGCATACCCTGACACTCTATACGTTGCTCCTCTTATCGGACCGGACACCGTTTCTACCATGCCGGATCAAGCCCTTCAAGCATTTATCGACCATGGGGCTGTATCAAGGACGATTGACTCGAAAGTGTCTGAAGCTGAAGGTGTTTACAATGCAATTGAGAAGCTGGGAATCAGCTGGAGTGATGTTGGAAATCAGCTTGAAGTTGAAGGAGTTGATTCTTTCAAGAAGAGTTTTGATAGCCTGCTTAGTACTCTGCAAGAGAAGGCCAACTCTCTTAAGCTGGTTAGTTAG 1320 46.59 MASISNLSNPTSSSLSSSFKPRSSQTKCLINIHHPFSYFTAKLSSSRLSLRSNTALSGSLVVRCSQNGGSGSPTKRTVLHDLYEKEGQSPWYDNLCRPITDLLPLIASGVRGVTSNPAIFQKAISTSNAYNDQFRELVKAGKDIESAYWELVVKDIQDACKLFEPIYDETDGGDGYVSVEVSPRLADDTVGTVAAAKWLHKVVDRSNVYIKIPATAPCVPSIRETISLGISVNVTLIFSLARYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLVDKLLEKIGTPEALDLRGKAAVAQAGLAYKLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFIDHGAVSRTIDSKVSEAEGVYNAIEKLGISWSDVGNQLEVEGVDSFKKSFDSLLSTLQEKANSLKLVS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3432657 3435439 - Conep15aG0066700.1 Cone15ag0654 453782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0654 439 ProSitePatterns Transaldolase signature 1. 112 120 IPR018225 GO:0005975(InterPro)
Cone15ag0654 439 MobiDBLite consensus disorder prediction 1 21 - -
Cone15ag0654 439 SUPERFAMILY Aldolase 85 431 - -
Cone15ag0654 439 FunFam Transaldolase type 77 432 - -
Cone15ag0654 439 Pfam Transaldolase/Fructose-6-phosphate aldolase 105 427 IPR001585 GO:0005975(InterPro)
Cone15ag0654 439 Hamap Transaldolase [tal]. 79 438 IPR004732 GO:0004801(InterPro)|GO:0005737(InterPro)|GO:0006098(InterPro)
Cone15ag0654 439 Gene3D Aldolase class I 77 432 IPR013785 -
Cone15ag0654 439 CDD Transaldolase_like 89 423 IPR004732 GO:0004801(InterPro)|GO:0005737(InterPro)|GO:0006098(InterPro)
Cone15ag0654 439 PANTHER TRANSALDOLASE 75 431 IPR001585 GO:0005622(PANTHER)|GO:0005975(InterPro)
Cone15ag0654 439 PIRSF Trnald_Bac_Plnt 68 439 IPR004732 GO:0004801(InterPro)|GO:0005737(InterPro)|GO:0006098(InterPro)
Cone15ag0654 439 NCBIfam transaldolase 89 426 IPR004732 GO:0004801(InterPro)|GO:0005737(InterPro)|GO:0006098(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0654 K00616 - - mdm:103433158 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1321 Cone-Chr18:9155388 Cone15ag0654 Cone-Chr15:3432657 6.63E-59 transposed
Cone8ag0555 Cone-Chr8:4186632 Cone15ag0654 Cone-Chr15:3432657 2.95E-253 transposed
Cone14ag0644 Cone-Chr14:3235123 Cone15ag0654 Cone-Chr15:3432657 1.36E-286 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0644 Cone15ag0654 . . . . . . Blo02g00212 . . . Bpe14g00821 . . . . . . . . . . . Cpe03g01174 . . . . . . . . . . . . . . . . Chy07g01548 Cme07g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007870 1 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 36