Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0655 ATGTTTGCTGCAGAAATATACATGCATAGGTTCCTCTTAACTAGTGCTGTAAGAACACTTAATCCTGAAGAAGCAGATTGGTTTTATACCCCTATATATGTCACTTGTGATCTCACCCCTACCGGTTTGCCTTTACCCTTCAAATCTCCTCGTATGATGAGAAGCGCGGTTCAGCTCATCGCTTCAAATTGGCCGTATTGGAATCGGACAGAAGGGGCCGATCACTTCTTTGTCGTGCCCCATGATTTTGGTGCTTGTTTTCATTATCAGGAAGAGAAGGCTATTGAACGGGGAATACTTCCGTTACTACAAAGAGCAACCTTGGTTCAGACATTTGGGCAAAGAAACCATGTATGTTTGAATGAAGGTTCCATCACTATTCCTCCATATGCTCCTCCTGAGAAAATGCAGACCCATTTAATTCCCCCACATATCCCGAGATCTATCTTTGTCTACTTCCGTGGTTTGTTCTATGATGTTAACAATGACCCGGAAGGTGGTTATTATGCAAGAGGAGCAAGGGCAGCCGTTTGGGAGAATTTCAAGAACAACCCACTCTTTGACATCTCTACCGATCATCCAACCACATATTATGAAGACATGCAACGATCCGTGTTCTGTTTGTGCCCTCTGGGGTGGGCCCCATGGAGTCCTAGACTGGTCGAAGCAGTTGTATTCGGCTGCATCCCCATTATCATAGCCGACGACATTGTCTTGCCATTTGCCGACGCTATCCCCTGGGAGGAAATCGGCGTCTTTGTAGCAGAAGAAGAAGTCCCAAACTTGGACACAATTCTGACGTCTATACCTCCCCATGTCATTTTGAGGAAACAGAGGTTGCTGGCTAATCCTACCATGAAACGGGCCATGATGTTTCCTCAACCGGCCCAGCCTCGCGACGCATTCCATCAGATTCTCAACGGTCTGGCTCGTAAATTGCCACATGAGAAACACATTTATTTGAAGCCGGGTGAGAAGATTCTTAATTGGACTGCCGGTCCAGTCGGGGACTTGAAACCTTGGTGA 1026 46.49 MFAAEIYMHRFLLTSAVRTLNPEEADWFYTPIYVTCDLTPTGLPLPFKSPRMMRSAVQLIASNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPYAPPEKMQTHLIPPHIPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRSVFCLCPLGWAPWSPRLVEAVVFGCIPIIIADDIVLPFADAIPWEEIGVFVAEEEVPNLDTILTSIPPHVILRKQRLLANPTMKRAMMFPQPAQPRDAFHQILNGLARKLPHEKHIYLKPGEKILNWTAGPVGDLKPW 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3436316 3437802 - Conep15aG0066800.1 Cone15ag0655 453783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0655 341 Pfam Exostosin family 1 269 IPR040911 -
Cone15ag0655 341 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 2 311 IPR004263 GO:0006486(InterPro)|GO:0009834(PANTHER)|GO:0010417(PANTHER)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0655 K20870 - - cit:102621903 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0655 Cone-Chr15:3436316 Cone19ag0253 Cone-Chr19:1681669 5.53E-237 dispersed
Cone14ag0645 Cone-Chr14:3238788 Cone15ag0655 Cone-Chr15:3436316 1.48E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0645 Cone15ag0655 . . . Csa04g00220 . . . . . . Bpe14g00820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68