Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0659 ATGCCATCTGGAGTAGTAGATGTAAAGGGATTGTCCCCGTCTTCCTACTTCTCTGAGGATCCACATCTTCCAAATGAGAGGCAGGTTGGATTTTGGAAGTCGTCTGATGTGCCTGATCATCATGGCATTGGCAATTCAGTTGCTACATCATCTCCGGAGAAAATTTCAATGTCTGAATATCAGACAGTGAAGTCCCTGGACCATCCGGATTCTCTCCTAATGCTAGACAAGAAAGTGAATGTCAACTCAAATAGAAGTGCTGTTGGAGCAGAGAGAAAAATCAGACATACCATGACCAATGAAGTCAATATCATGGGTGGTCAGTGCGAGAGTAGTCTCTTCTCGAGTTCTATGTCAGAGTTGTTTACTAGGAAGTTGAGATTATCCTCAGGAAACACTCTATATGGCCATTCTGTTGATACTGTTGCATCTCACTATGAGGAAGAAGAACCTTTTGAATCACTTGAAGAGTTGGAGGCTCAAACCATTGGAAATCTACTCCCTAGTGATGACGATTTGCTTTCTGGTGTAACTGATGGGCTTGACTTTGTATACCATTCCACTGGCGGGGATGATACCGAGGACTTAGACTTCTTTAGCAACATTGGAGGGATGGATCTGGGAGATGACGGGTTATCTGATGTGCAGAAGAATCTGGAATCTATTGGAGGAGTACCTAATGGGCAATCAGGCATTAATGGTTCAGTAGTTGGAGAACACCCTTTAGGCGAACATCCTTCTAGGACATTATTCGTTAGAAATATAAATAGCAATGTTGAAGATTCTGAATTGAGGACCCTATTTGAGCAATATGGAGATATTTGCACACTCTATACAGCCTGCAAACATCGTGGTTTTGTTATGATTTCTTATTATGATATTAGAGCAGCCAGAAATGCTATGAAATCTCTTCAGAATAAACCATTGAGGCGTAGAAAGCTTGACATTCACTACTCTATTCCAAAGGACAATCCTTCAGAAAAAGATGTTAATCAAGGCACTCTTGTTGTCTTTAACCTTGATTCTTCTGTTTCTAATGATGAGCTCCGTCTGATCTTCGGTGCCTATGGCGAAATCAAAGAGATCCGTGAAACCGCACACAGAAGTCAACATAAGTTTGTAGAATTTTATGATATCAGATCTGCAGATGCAGCTCTATGTGCATTAAATGAAAGTGATATAGCTGGCAAGCGGATTAAGGTTGAGCCAAGCCGTTCTGGTAGTCTGAGACGGAGTTTGGCACAACAGCTCCCTCCAGAATTGGAGCAAGTAGAATTTGGCCTTTATCTACAGCAGAGTAGCCCTCCTGTTAGCTCAATTAGTGGTTTCTCTGGCACAGTTCCAAATGGAGCAATTTTGTCTAGCAGTATTGAAAGTAGATCTGTTTTTGGGCTACACTCTGCAGTACGAGCTTCATCTTTGGATGCTGCATTGCATCATGGGATATCTTCTAGTGTTCCTAATAACTTATCATCTCTGATGAGAGTAGAATCAATTAGAAATCAATCTGGCTTCATGGACTCTGTTCACTCAGCTTCCCTAATTGAATATGGTAATCGAGGAGCACTGCCATTTCATCCTCACTCACTTCCAGAATGTCATGACAGCTTGAATAACAATGCACACCAAAATTCTCCAGGTGCCATGCCTGGAAATCTTAGACCCCCTGATAGAATTGATAACAGACAACTCCACGGTGTGAGCATTAATGGGCACTCAATTGATCTCAATGAAGGTGTTTTTGGTTCTGCCGGTACTGGGCCCCGCCCCCTTCCAGGACATCATTATAGATGGGGTAACTCGTATCATTCTCAGTCTTCTGGCATGGTCTGGCCAAACTCGCCAACATATGTGAATGGAATTCATGCAGCTCATCCTCCATCCAATCTTCATGGAGTTCCAAGAGGACCATCTCACCTTATGCATACAGTCTTGCCCATTAACAACCACCATGTGGGATCAGCTCCAGCAGTTAATCCTTCTCTGTGGGATAGGCAGCATGCTTATGCAGGGGAATTGTCTGAGCCCACTGGTTTTCATCCAGGATCTCTAGGGAGTATGAAGATATCTAGTAACTCACCCCATTCTCTGGATTTTGTCTCTCACAACTTTTCTCATGTGGGTGGAAATTGTGTGGATCTGCCAATTGCACAAAACAATGTGGGACTACAAGCCCATCATCAGAGGTGCCTGATGTTTCCAGGGAGAGGCCAGATTCCTCCATTGGCAAGTTCCTTTGATGCTCTAAATGAACGTGCAAGGATCCGTAGAAATGAAGTCAACTCTAATCAGTCTGAAAACAAGAAACAGTATGAACTGGATATTGACCGTATCATGAGAGGAGATGACACTCGTACAACTCTAATGATAAAGAACATTCCTAACAAGTATACCTCAAAGATGCTTTTGGCTGCCATTGATGAACGCCATCGCGGAACTTATGACTTCATTTATCTACCAATTGACTTTAAGAACAAATGCAATGTGGGGTATGCATTCATCAACATGACTGAGCCTACCAGAATCATTCCTTTCTATCAGGCATTCAATGGGAAAAAATGGGAGAAGTTTAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGTATACAAGGAAAGGGTGCTCTCATTGCTCACTTCCAAAATTCAAGTTTAATGAATGAAGACAAGCGATGTCGGCCAATTCTATTCAACACAGATGGTCCCAATGCAGGTGATCAGGTGCCCTTCCCAATGGGTGTTAATGTTCGTAATAGACCCGGAAAAGCACGAATGAATGCCCATGACCATGAAGAAAGCCTTGGTGAATATTCTGGGCAGAGGGAAGATTTTTCTAATGGAGATTCATCCTTAGGTAACCTTGACGATTTCGAGCCAGGCGCTTAA 2886 42.79 MPSGVVDVKGLSPSSYFSEDPHLPNERQVGFWKSSDVPDHHGIGNSVATSSPEKISMSEYQTVKSLDHPDSLLMLDKKVNVNSNRSAVGAERKIRHTMTNEVNIMGGQCESSLFSSSMSELFTRKLRLSSGNTLYGHSVDTVASHYEEEEPFESLEELEAQTIGNLLPSDDDLLSGVTDGLDFVYHSTGGDDTEDLDFFSNIGGMDLGDDGLSDVQKNLESIGGVPNGQSGINGSVVGEHPLGEHPSRTLFVRNINSNVEDSELRTLFEQYGDICTLYTACKHRGFVMISYYDIRAARNAMKSLQNKPLRRRKLDIHYSIPKDNPSEKDVNQGTLVVFNLDSSVSNDELRLIFGAYGEIKEIRETAHRSQHKFVEFYDIRSADAALCALNESDIAGKRIKVEPSRSGSLRRSLAQQLPPELEQVEFGLYLQQSSPPVSSISGFSGTVPNGAILSSSIESRSVFGLHSAVRASSLDAALHHGISSSVPNNLSSLMRVESIRNQSGFMDSVHSASLIEYGNRGALPFHPHSLPECHDSLNNNAHQNSPGAMPGNLRPPDRIDNRQLHGVSINGHSIDLNEGVFGSAGTGPRPLPGHHYRWGNSYHSQSSGMVWPNSPTYVNGIHAAHPPSNLHGVPRGPSHLMHTVLPINNHHVGSAPAVNPSLWDRQHAYAGELSEPTGFHPGSLGSMKISSNSPHSLDFVSHNFSHVGGNCVDLPIAQNNVGLQAHHQRCLMFPGRGQIPPLASSFDALNERARIRRNEVNSNQSENKKQYELDIDRIMRGDDTRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTEPTRIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKGALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRNRPGKARMNAHDHEESLGEYSGQREDFSNGDSSLGNLDDFEPGA 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3452258 3458796 - Conep15aG0067200.1 Cone15ag0659 453787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0659 961 SUPERFAMILY RNA-binding domain, RBD 245 408 IPR035979 GO:0003676(InterPro)
Cone15ag0659 961 PANTHER RNA RECOGNITION MOTIF-CONTAINING 111 932 - GO:0045836(PANTHER)
Cone15ag0659 961 Gene3D - 239 331 IPR012677 -
Cone15ag0659 961 FunFam MEI2-like protein 5 isoform 2 237 331 - -
Cone15ag0659 961 FunFam Protein MEI2-like 1 332 427 - -
Cone15ag0659 961 Gene3D - 332 423 IPR012677 -
Cone15ag0659 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 406 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 Pfam RNA recognition motif 2 785 881 IPR007201 -
Cone15ag0659 961 Pfam RNA recognition motif 335 400 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 Pfam RNA recognition motif 250 314 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 CDD RRM3_MEI2_like 788 873 IPR034454 -
Cone15ag0659 961 CDD RRM1_MEI2_like 247 323 IPR034453 -
Cone15ag0659 961 MobiDBLite consensus disorder prediction 922 938 - -
Cone15ag0659 961 MobiDBLite consensus disorder prediction 1 22 - -
Cone15ag0659 961 SMART rrm1_1 787 863 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 SMART rrm1_1 249 317 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 SMART rrm1_1 334 402 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 MobiDBLite consensus disorder prediction 918 961 - -
Cone15ag0659 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 321 IPR000504 GO:0003723(InterPro)
Cone15ag0659 961 SUPERFAMILY RNA-binding domain, RBD 787 871 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0659 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0659 Cone-Chr15:3452258 Cone8ag1573 Cone-Chr8:11727520 6.83E-211 dispersed
Cone7ag1556 Cone-Chr7:10706329 Cone15ag0659 Cone-Chr15:3452258 1.42E-17 transposed
Cone14ag0649 Cone-Chr14:3252699 Cone15ag0659 Cone-Chr15:3452258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46