Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0666 ATGGGTTCAAGCACAATAACTTCTTTTCTTCCATGGAAGAAAGCCTTGGCATTAGCCATAGTTCTGCAACACTTATCTTATTTCACAAATGCAGTAGCAGAGCCTTCTCTTATTTCTCAGATTGATAAGATTTCTAAGCTTCCTGGTCAGCCCGAAGTGGGGTTCGTTCAGTATTCGGGCTATGTTACCGTTGATGAGAGGAATCTTAAAGCTCTGTTTTATTACTTTGCTGAAGCAGAAACAGATCCGGCTTCCAAGCCTCTTGTTCTATGGCTCAATGGAGGGCCTGGCTGTTCTTCTCTAGGAGTTGGAGCCTTCTCTGAAAATGGACCCTTTAGGCCAAGTGGACAAGTGCTCATAAGAAATGAGTATAGCTGGAACAGAGAAGCAAACATGTTATATTTGGAAAGCCCAGTTGGAGTTGGGTTTTCTTATTCAACTGATTCATCTTCTTATTCTGTTAATGACAAAATCACTGCCACGGACAATCTAGTGTTCTTGCAAAAATGGTTCCTTAAATTCCCTCAATACCGGAACAGAAGTTTGTACATTACCGGAGAAAGCTATGCCGGCCACTATGTTCCCCAGCTAGCCGAACTCATGCTCCGACCAAACAATAAAGAAAATCCCTTCAATTTAAAAGGCATTGCCATGGGCAATCCCGTGCTTGAATTTTCGACCGATTTCAATTCTAGGGCTGAATTTCTGTGGTCTCATGGACTAATATCGGACTTGACATATAAAATGTTCACTTCCTCGTGTAACTATTCTCGATATGTAAGTGAGTACTACAGAGGTTCTGTTTCGAGTGTTTGTTCAAGAGTGATGAGCCAAGTTACTAGAGAAACAAGTCGGTTTGTTGACAAGTACGATGTTACACTTGACGTTTGCATTTCTTCCGTATTTTCTCAATCCAAAATCCTCGCCCCCAAACAAGTTACAGAGACCGTAGATGTTTGCGTGGAAGATGAGACTGTCAATTATCTAAACAGAAGAGATGTACAGAAGGTGCTTCACGCACGTCTTGTCGGGGTGCGGCGCTGGTCTGTTTGTAGCAGTGTCCTGGATTATGAGCTTCTTGACCTGGAGATACCGACGATCACAATTGTAGGAAAACTTGTCAAGGCAGGAATTCAAGTTTTGGTTTACAGTGGGGACCAAGACTCTGTTATTCCGTTGACGGGAAGTCGGAAGTTGGTTCACGGGCTAGCAGGGGAACTCGGACTGAAGACGAGTGTGCCGTATAGAGTGTGGTTTGGGGGTCAGCAGGTGGGTGGATGGACTCAGGTTTATGGGAATATACTGTCCTTTGCCACTATTAGAGGAGCTTCCCATGAAGCTCCGTTCTCTCAGCCTCAAAGATCCCTTGTTTTGTTCAAGTCCTTCTTGGAAGCTCGACCTCTCCCAGAAGCCTTCTAA 1419 44.19 MGSSTITSFLPWKKALALAIVLQHLSYFTNAVAEPSLISQIDKISKLPGQPEVGFVQYSGYVTVDERNLKALFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPSGQVLIRNEYSWNREANMLYLESPVGVGFSYSTDSSSYSVNDKITATDNLVFLQKWFLKFPQYRNRSLYITGESYAGHYVPQLAELMLRPNNKENPFNLKGIAMGNPVLEFSTDFNSRAEFLWSHGLISDLTYKMFTSSCNYSRYVSEYYRGSVSSVCSRVMSQVTRETSRFVDKYDVTLDVCISSVFSQSKILAPKQVTETVDVCVEDETVNYLNRRDVQKVLHARLVGVRRWSVCSSVLDYELLDLEIPTITIVGKLVKAGIQVLVYSGDQDSVIPLTGSRKLVHGLAGELGLKTSVPYRVWFGGQQVGGWTQVYGNILSFATIRGASHEAPFSQPQRSLVLFKSFLEARPLPEAF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3503525 3506382 - Conep15aG0067900.1 Cone15ag0666 453794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0666 472 FunFam Carboxypeptidase 366 465 - -
Cone15ag0666 472 FunFam Carboxypeptidase 37 469 - -
Cone15ag0666 472 Pfam Serine carboxypeptidase 48 464 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone15ag0666 472 SUPERFAMILY alpha/beta-Hydrolases 46 468 IPR029058 -
Cone15ag0666 472 Gene3D alpha/beta hydrolase 39 299 IPR029058 -
Cone15ag0666 472 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185(InterPro)
Cone15ag0666 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone15ag0666 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone15ag0666 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone15ag0666 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone15ag0666 472 Gene3D - 367 465 - -
Cone15ag0666 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185(InterPro)
Cone15ag0666 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 461 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0005773(PANTHER)|GO:0006508(InterPro)
Cone15ag0666 472 Gene3D - 320 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0666 K16297 - - rcu:8285679 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0666 Cone-Chr15:3503525 Cone20ag0399 Cone-Chr20:1935815 4.34E-138 dispersed
Cone13ag0254 Cone-Chr13:1742222 Cone15ag0666 Cone-Chr15:3503525 4.95E-213 transposed
Cone13ag0634 Cone-Chr13:6398076 Cone15ag0666 Cone-Chr15:3503525 2.11E-206 transposed
Cone14ag0656 Cone-Chr14:3291606 Cone15ag0666 Cone-Chr15:3503525 1.96E-292 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0656 Cone15ag0666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126