Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0667 ATGGGGAAGGAAGAAAGTTGTAAAGTAGATGTAGAAGAAGGCGAAATTTCCGATACAGCATCAGTGGAGGAGATAAGTGAAGAGGTTTTTAACAAGCAGGAAAGTGCGGTGGCGGCGGCGGCGGCTATAATGACGGCCCCGAAGGAGTCTAATCGAGAAACTAGGGTTTGGACGATGCGTGATCTGTATAAATCCTACCCGGCGATTTGTAGGGGTTATACGTCGGGTTTGTATAACCTTGCTTGGGCACAGGCAGTGCAGAATAAACCTCTAAATGATCTCTTTGTTATGGATGTTGATCCTGAGGAGAACTCAAATAGCAAAGAAGCTGTGCTTGTTGATAGTGGTGATGAAATGGATGTTAAGATTGTAGATATTGAGAAGGAGGAAGGGGAATTAGAGGAAGGTGAGATTGACTTTGATTCCGAGCCAATCGATGAAGAGAGTGGGGTTCTCGGTTTGAATCAAAACAAGTTTGAGAAGCAAGTGAATGTGATTCGAGAATCGTTAGAAAGTGTTACCCTGAATGATGCAGAGAAATCATTTGAAGATACGTGTTCTAGACTGTATCTGACTTTTGAGAATTTGAAGGAATTCCTTTCAGAAAGCCAATCTCCTGGAAGTTATTCTCTCATTCCATTGTCATTTGCTGCTGTTCAAGTGGCCAATTCTATCTTCTCCTCCATGAATCAGAATGAGAAGGAAGAGAATAAGCACCAGTTTTCGAGGTTACTTTCTTTTGTAAAAGAGCACAGTCCTTCTCTGTTCTCTCATGACCAGAGGAAAGAGATAGAGGTGATGACGCAGTCCCTGGATTCCTTAGAACTTATGCCAATGGTGAAAGAGGATCAGTTGAACAATGGGATGGATGTTAAGGATTCTGGTGCTTTTCCTGCAATTGGGAGTCATATGACTTCTTCAACTAAACTTCCTTTGGACTTTATAGCTAATGTATCGATGCTACCAAATAACCGACAACTCACACCAGAAGCTCTGAAATCAGGAGTATCTGGTTTTAAGGGTAGAGGGATTCTCCTTCCCTTGTTGGACCTTCACAAAGATCATGATGAAGACAGTTTACCATCCCCTACACAAGCAACAGTGTCATCTTCTCCTTTTCATAAAGCATTGACTGGTGGACATGAGATGGTAAAATCAAGCCCAGCCCCTGCGAAGGCGGCTCCCAACCCAGAAGCTTCTAGATTGCAACCCTATGAAACTGATGCATTGAAAGCCGTTTCTTTCTATCAACAAAAGTTTGGTCGAAGTTCTTTTTCTATCTATGATAGACTTCCTAGCCCAACACCATCAGAAGAAGGCGATAATACAGGTGGAGATGTTAGTGGTGAGGTATCTAGTGAACCCATTGTAGGAAACTTAAAGGCTTCAAATCAGCCATTTATGGGACATGCTTTAGTGAATTCTGTGCCCAGCCCAACTGCTGTTTATTTTCCTAATGTAGACAGCTCTAGCACACAAGGGTTGGTTGCTGCTAGAAATGCTGCACCTACAAGTTCTGCATCTACTCCTACCGTGAAAGTTTCTGCAAAAAGTAGAGATCCTAGGCTTCGATTTGCCAATTCTGATGCTAGTGTTACTAAAGCAGATTCTGTTGGACCTGTAAGTTCAAGGAAGCAAAAGATTGATGAGGACACCAATTTAGATGGTCCTTCATTGAAAAGGAAGAGGAACGGATTAGAGACCTGCACTGGAACAGGTGGTTGGTTGGAAGATTCTCCATTGGCTGGTCCTCGACTAATGAGTGGGAATCCCTTGAAGGAGAATGCGGAAACTGATATGAGAAAAATGGCATCTGTCGTGTATCCTCCTGATACCAGTAGTGGGAATGCCAATGCTGCAAATACTGGAAATGAGAAGGTACCAGTAACTATTGGTAGCAGCACTGCATCCTTGCCTGCTTTATGGAAAGATATTTCTGTGAATCCAACTATGCTAATAAATCTATTAAAGATGGGACAGCAACAGCGATTAGCGGCAGAATCTCAACAGAAATCTTCTGAACAAGGAAAAATTGGAACACATTCTCCAGGTCCAGATTCGATACACGGCTCAGCTCCATTGGTAAATGGTAATCCCTCCATTACCGCAGGGAATTTGCAGAAACCAGCAGGACCACTGAAAGTTCTTTCACAAGTAGCTCCATTGAACCTGCAAGAAGATACGGGAAAAGTTCGAATGAAACCTCGTGACCCTCGGCGTATCCTCCATGGTAATGCACTTCAAAAGACTGGTAGTTTGGGAAATGAGCAGTTCAAAACTATTTTATCCAGTGCCTTAAGTGAGCAGGGAAATAATGATAATTTCAATGGCCTAAAGCAAGATGGTAAAGGAGATGCAAAATTGCTGCCTTCTCAAATAGTTCCCCCGCCTGATATTACTAGGCAGTTCACCAAAAATCTTAAAAATATCGCTGATATCATGTCTGTTTCTCAAACACCAACCATTTCACCAAGTCTTTCGACCCAACCAGCTCCCATTAAGGCAGACAGAGTGGATGTAAAGACATCAAGCTCTGAAGAACAGCAGGCCGTAACAAATTCTGTAACTGAAGTAGGTGTAGCAGGTCCCTCACGTGCACAGGGCATGTGGGGAGATGTGGAACATTTATTTGAAGGATATGATGACCAGCAGAAAGCTGCCATACAGAGAGAGAGGGCAAGGAGAATAGAAGAACAGAAGAAAATGTTTGCAGGTCACAAACTTTGCCTTGTCTTGGATCTTGATCACACACTTCTTAATTCAGCCAAGTTTATGGAAGTGGATCCAGTGCATGATGAGATATTGAGAAAAAAAGAGGAACAAGATCGTGAAAAACCGCAGAGGCATCTTTTCCGGTTTGCTCATATGGCAATGTGGACCAAACTGCGGCCAGGAATCTGGAATTTTTTGGAAAAGGCTAGCAAGCTCTACGAACTGCATTTATACACCATGGGAAACAAGCTATATGCTACAGAGATGGCCAAAGTGCTAGATCCTAAGGGGGTTCTCTTTGCTGGACGGGTTATTTCAAGGGGTGATGATGGTGACCCCTTTGATGGTGATGAGAGAGTTCCGAAGAGCAAGGATCTGGAAGGGGTATTGGGCATGGAATCAGGTGTTGTAATTATTGATGATTCTATCAGGGTCTGGCCACATAATAAATTGAACCTAATTGTTGTCGAAAGGTATATTTACTTTCCCTGTAGTAGACGCCAATTTGGGCTTCAGAGGCCTGCTCTTCTTGAGATTGATCATGATGAGAGGCCAGAAGATGGTACTTTAGCATCCTGTTTGTCTGTTATTGAGAGATTACACCAAATATTTTTCTCCCACCACGCATTAGACGTAGACGTCAGAAATATCCTGGCCTCAGAGCAACAGAAGATATTGGGTGGATGTCGAATAGTATTTAGCAGGGTTTTTCCAGTGGGTGAGGCCAATCCCCACCTACATCCGTTATGGCAAACAGCAGAACAGTTTGGCGCTGTTTGCACGAACCAGATTGATGATCAGGTCACCCATGTGGTCGCCATTTCCCCTGGAACCGATAAGGTAAATTGGGCTTTGTCGTCCGGAAGATTCGTTGTGCACCCTGGGTGGGTGGAGGCATCTGCTTTGCTATACAGGAGGGCAAATGAGCAAGACTTTGCCATTAAACCACAACAAACACCATCCTAA 3678 43.53 MGKEESCKVDVEEGEISDTASVEEISEEVFNKQESAVAAAAAIMTAPKESNRETRVWTMRDLYKSYPAICRGYTSGLYNLAWAQAVQNKPLNDLFVMDVDPEENSNSKEAVLVDSGDEMDVKIVDIEKEEGELEEGEIDFDSEPIDEESGVLGLNQNKFEKQVNVIRESLESVTLNDAEKSFEDTCSRLYLTFENLKEFLSESQSPGSYSLIPLSFAAVQVANSIFSSMNQNEKEENKHQFSRLLSFVKEHSPSLFSHDQRKEIEVMTQSLDSLELMPMVKEDQLNNGMDVKDSGAFPAIGSHMTSSTKLPLDFIANVSMLPNNRQLTPEALKSGVSGFKGRGILLPLLDLHKDHDEDSLPSPTQATVSSSPFHKALTGGHEMVKSSPAPAKAAPNPEASRLQPYETDALKAVSFYQQKFGRSSFSIYDRLPSPTPSEEGDNTGGDVSGEVSSEPIVGNLKASNQPFMGHALVNSVPSPTAVYFPNVDSSSTQGLVAARNAAPTSSASTPTVKVSAKSRDPRLRFANSDASVTKADSVGPVSSRKQKIDEDTNLDGPSLKRKRNGLETCTGTGGWLEDSPLAGPRLMSGNPLKENAETDMRKMASVVYPPDTSSGNANAANTGNEKVPVTIGSSTASLPALWKDISVNPTMLINLLKMGQQQRLAAESQQKSSEQGKIGTHSPGPDSIHGSAPLVNGNPSITAGNLQKPAGPLKVLSQVAPLNLQEDTGKVRMKPRDPRRILHGNALQKTGSLGNEQFKTILSSALSEQGNNDNFNGLKQDGKGDAKLLPSQIVPPPDITRQFTKNLKNIADIMSVSQTPTISPSLSTQPAPIKADRVDVKTSSSEEQQAVTNSVTEVGVAGPSRAQGMWGDVEHLFEGYDDQQKAAIQRERARRIEEQKKMFAGHKLCLVLDLDHTLLNSAKFMEVDPVHDEILRKKEEQDREKPQRHLFRFAHMAMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESGVVIIDDSIRVWPHNKLNLIVVERYIYFPCSRRQFGLQRPALLEIDHDERPEDGTLASCLSVIERLHQIFFSHHALDVDVRNILASEQQKILGGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDDQVTHVVAISPGTDKVNWALSSGRFVVHPGWVEASALLYRRANEQDFAIKPQQTPS 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3512628 3518191 - Conep15aG0068000.1 Cone15ag0667 453795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0667 1225 Pfam BRCA1 C Terminus (BRCT) domain 1155 1204 IPR001357 -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 527 586 - -
Cone15ag0667 1225 SMART BRCT_7 1127 1208 IPR001357 -
Cone15ag0667 1225 SMART forpap2 906 1070 IPR004274 -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 543 562 - -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 499 515 - -
Cone15ag0667 1225 Gene3D - 892 1128 IPR023214 -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 427 453 - -
Cone15ag0667 1225 Gene3D BRCT domain 1129 1218 IPR036420 -
Cone15ag0667 1225 CDD BRCT_CTDP1 1117 1213 - -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 609 625 - -
Cone15ag0667 1225 NCBIfam FCP1-like phosphatase, phosphatase domain 904 1066 IPR011947 GO:0004721(InterPro)|GO:0005634(InterPro)
Cone15ag0667 1225 CDD HAD_FCP1-like 907 1060 - -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 663 708 - -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 427 449 - -
Cone15ag0667 1225 ProSiteProfiles FCP1 homology domain profile. 903 1083 IPR004274 -
Cone15ag0667 1225 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 892 1128 - -
Cone15ag0667 1225 Pfam NLI interacting factor-like phosphatase 908 1064 IPR004274 -
Cone15ag0667 1225 SUPERFAMILY HAD-like 897 1072 IPR036412 -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 606 625 - -
Cone15ag0667 1225 PANTHER RNA POLYMERASE II CTD PHOSPHATASE 353 1220 IPR039189 GO:0008420(InterPro)|GO:0008420(PANTHER)|GO:0070940(PANTHER)
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 499 518 - -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 663 680 - -
Cone15ag0667 1225 FunFam RNA polymerase II C-terminal domain phosphatase-like 3 1129 1218 - -
Cone15ag0667 1225 ProSiteProfiles BRCT domain profile. 1125 1218 IPR001357 -
Cone15ag0667 1225 MobiDBLite consensus disorder prediction 355 399 - -
Cone15ag0667 1225 SUPERFAMILY BRCT domain 1127 1220 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0667 K18999 - - csv:101205188 1308.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0679 Cone-Chr10:3295256 Cone15ag0667 Cone-Chr15:3512628 2.75E-74 dispersed
Cone15ag0667 Cone-Chr15:3512628 Cone3ag0704 Cone-Chr3:3602543 8.42E-73 dispersed
Cone14ag0657 Cone-Chr14:3304769 Cone15ag0667 Cone-Chr15:3512628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0657 Cone15ag0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005044 3 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41