Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0684 ATGCTGCTTTCTGCAGAAATTTGGGGTAAGTTCTCAGTGTACAGAGAAACCCCTGCAACAATGGCTGTAGCTGCCACTGATTCTCTCCGAAATCAGTTTTTGATCGGTAGATTAGGGTTAGTAAGAGCCTCGTCTCGTCATCGTTATAACTCCGAAATGCTTTCTACTGTTTCCGGAAGGGTGAGTCGGACATGTCGTTGCAGCAACCTCAACGCCTCTAACTCCAGGTCGGTGGGATTGGGCGGAGGGGGAGGAGGAAGCGATGTCTTTTCCGTGACGTCGTCGCCTAAGACTAAGTACGAGGTTGATTATCTCGGACAAAGCACTAAAGGCGATTTGAATCTCAAACTCGACCATCTTGACGCTTTTGGGTTTGATAGCCTGGAAGCTTTAGAAGGTCAAATCGAGGAAGTAGCCAGAATGGAGGCTCAAGAAGCTGAGGATTTGCTTAAGGGCTTAGGAATCACAAGTTTTTCTTCGTCAAGACATTCACCCCGTGGTATATTTTGTAGCCGCACTTTGAATCTCCGATCAATCAGTGCCATTGGATATGACATGGACTACACCTTGATACATTATAATGTGATGGCTTGGGAAGGAAGAGCATATGACTATTGTATGGAGAATTTAAGGAACATGGGTTACCCTGTGGATGGACTTGCTTTTGACCCTGAATTGGTTATCAGAGGCCTAGTCATAGACAAAGAGAGAGGAAATTTAGTTAAGGCCGATCGTTTCGGCTATGTGAAGAGGGCAATGCATGGGACCAAAATGCTCTCTACTCAAGATGTAAGTGAGATTTATGGACGGGAACTGGTCGATCTACGGAAGGAGAATCGATGGGAGTTTCTCAATACACTGTTCTCTGTTTCCGAGGCTGTTGCATACATGCAGATGGTCAACAAACTGGATGAGGGAGCCATGGCACCAGTGCTTGGTCCTCTTGATTATAAAGGGCTTTACAAGGCAGTTGGTAAAGCTCTCTTCAGGGCACATGTTGAAGGACAGCTTAAGAGTGAAATAATGTCTAAGCCCGAATTGTTTGTAGAGCCTGATCCTAATCTACCTTTAGCCCTACTGGATCAAAAGGAGGCTGGTAAAAAACTTGTCCTTATTACAAATTCGGATTATCATTACACGGACAAAATGATGCAGCATTCTTTCAACAGATATCTTCCAAATGACATGGGCTGGCGAGATTTGTTCGATATTGTAATTATCTCTGCAAGGAAGCCAGAATTCTTCCAAACGTCACACCCAATGTATGAGGTGGTGACAGATGAAGGTCTTATGAAACCGTGCTTCAAGGCCCGTACAGGCGGGGTGTACTCTGGAGGAAGTGCCCAGATGGTCGAGAACTCGCTCAATATCCATGGGGATGAAATATTGTACGTCGGTGATCATATTTACACTGATGTCAGTCAGTCCAAAGTTCATTTACGCTGGCGGACTGCCTTGATTTGTCGAGAACTGGAAGAAGAGTATACTGCTCTGATCCATAGCCGGGCTCATAGAGCATCACTAATCAAGCTTATAAATCAAAAGGAGGTTGTAGGGGATCTCTTTAATCAACTTCGCCTTGCTCTGCAAAGGCGAGCTAGAGGCCGTCCTGCTCAAACCCTCGCTGCAACCAACTTGGATGATGACGAACTGGCCGGAAGTATGCAAAAGCTGCTTATTGTTATGCAAAGACTAGACGAGAAGATTGCTCCAATGCTAGAAGCGGACGGAGAGCTCTTCAACAAAAGGTGGGGCTTTCTTTCGCGTGCCGGTTTATGGGATAAAAGCCATTTGATGAGACAAATCGAGAAGTATGCTGATATGTATACGTCGAGGGTCTCGAATTTCTTGCTCTATACGCCATTCATGTATTTCCGGTCCCAGGAACAGACCCTTGCTCATGATTCGTATTCTTACTACTGTCATATGGATGAGCTCAATGGTTCTGGCCTAGAACAGTCAAACAGCAACTCGGCTTGTGACTCACGCGGGTTGTAA 1998 45.6 MLLSAEIWGKFSVYRETPATMAVAATDSLRNQFLIGRLGLVRASSRHRYNSEMLSTVSGRVSRTCRCSNLNASNSRSVGLGGGGGGSDVFSVTSSPKTKYEVDYLGQSTKGDLNLKLDHLDAFGFDSLEALEGQIEEVARMEAQEAEDLLKGLGITSFSSSRHSPRGIFCSRTLNLRSISAIGYDMDYTLIHYNVMAWEGRAYDYCMENLRNMGYPVDGLAFDPELVIRGLVIDKERGNLVKADRFGYVKRAMHGTKMLSTQDVSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVNKLDEGAMAPVLGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPNLPLALLDQKEAGKKLVLITNSDYHYTDKMMQHSFNRYLPNDMGWRDLFDIVIISARKPEFFQTSHPMYEVVTDEGLMKPCFKARTGGVYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYTALIHSRAHRASLIKLINQKEVVGDLFNQLRLALQRRARGRPAQTLAATNLDDDELAGSMQKLLIVMQRLDEKIAPMLEADGELFNKRWGFLSRAGLWDKSHLMRQIEKYADMYTSRVSNFLLYTPFMYFRSQEQTLAHDSYSYYCHMDELNGSGLEQSNSNSACDSRGL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3674328 3679288 + Conep15aG0069800.1 Cone15ag0684 453812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0684 665 NCBIfam HAD-IG family 5'-nucleotidase 168 507 IPR008380 -
Cone15ag0684 665 Gene3D - 329 518 IPR023214 -
Cone15ag0684 665 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 134 636 IPR008380 GO:0008253(PANTHER)
Cone15ag0684 665 Pfam 5' nucleotidase family 168 636 IPR008380 -
Cone15ag0684 665 SUPERFAMILY HAD-like 165 637 IPR036412 -
Cone15ag0684 665 Coils Coil 128 148 - -
Cone15ag0684 665 CDD HAD_cN-II 169 491 - -
Cone15ag0684 665 FunFam Haloacid dehalogenase hydrolase 327 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0684 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0151 Cone-Chr11:710596 Cone15ag0684 Cone-Chr15:3674328 9.11E-07 dispersed
Cone15ag0684 Cone-Chr15:3674328 Cone18ag1330 Cone-Chr18:9209368 2.97E-49 dispersed
Cone15ag0684 Cone-Chr15:3674328 Cone20ag0139 Cone-Chr20:626607 1.84E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28