Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0686 ATGGACTTGAGTGGAAATAGCCTCTCCGGCCCCATACCAGACAGTTTCTTTAACCAATGTGGGTTGTTAAGAACAATATATTTGGGAAAGAACAAATTTTCGGGTGAAATACCGAGTAGTTTGGCTTCTTGTTCAAGTCTTGCTTCACTTGATTTGTCTGGTAATGTTTTTTCGGGTTCTGTACCTTCTGGAATATGGTCCTTGACTGGTCTTCGGTTACTGGATTTATCTGATAACATGTTAGAGGGTGAAATTGGAAATGAGATCGAAGGCATGACAAATATACGAGCTATTAATTTGAGTAAGAATCGGTTTTCTGGGCGAGTCCCAGACGGAATTGGAAGTTGCTTGCTCATGAGGTCTATTGATCTTAGCGAGAATTATTTTTCCGGGATTTTACCTGAGACAATGCGAAAACTTGCTCTTTGTGATAGTTTGAGTTTGCATGGGAATTCATTTGATGGTCAGATTCCATATTGGATCATAGAAATGAAAAGCCTAGAGACTTTGGATTTTTCGGGAAATAGATTTGCGGGTCCGATTCCGAGTTCATTTGGGAATCTTCAGAATCTGAAGGTGTTGAATTTTTCTTCAAATGTATTGACTGGGAGCTTGCCAGAATCTATGATTCAATGTGAAAACCTATTGGTCTTGGATTTAAGTAGCAATTCTCTTACGGGCGATCTCTCTCGATGGATTTATAGATTGATTTCACAGACTGCTGTGCTTTTGGAGAGTGAGCAAAGTAGAAGCATAAATCTTCAAGTCTTGGATTTATCTCAGAATGAGTTTTTGGGTGAAATTGCCCCGGAAATTCAGGTTTTAGACAGCTTGCAGTTTTTGAACTTATCTGGAAACTCTCTTGTTGGCCATATTCCGGAAACTGTTGGAGATTTGAAGGTCTTGAGTATTCTTGATTTGAGTAGGAATAAGCTAAATGGAAGCATACCGAAAGGGATTGGAGGAGCTGTATCTTTGAAAGAACTGAGGCTTGAGATGAACTTTCTAGTTGGCGAAATTCCGTCCTCGATTGGGAATTGTTCTGCACTAACTACTCTGATCATATCACAAAACAAAGTATCGGGTCCCATACCAACTGCTTTATCAGAACTCACCGATCTTCGAGATGTGGACTTATCATCCAACAACCTAAATGGAACTCTCCCAAAACAGTTAGCCAACCTCCCGAACCTTCTAACATTCAACATATCTCACAACAACCTCCAGGGGGAACTACCTTCTGGAGGCTTCTTCAATACTATCTCACCTTCCTCAGTTTCAGGAAACCCCTTCTTATGCGGGTCTGTTGTCAAGAAGTCTTGCCCTGCTGTCCTTCCCAAACCCATCGTCCTTAACCCCAACTCCTCCTCCGACTCCACTTCTAGCACTTCATTACCCACGAAACTCGGCCACAAAAGAATCATCCTTAGCATCTCCGCCCTCATTGCTATAGCTGCGGCTTCTGCCATCATTATCGGTGTCATCGCCATAAGTGTCCTTAACCTTCATGTCCGGTCAACCACTTCTCAGTCTGCAGCAGCCCTTGCTTTGTCTAGTGGGGAAGACTATAGTCGTTCCCCCACAACCGATGCCAATTCTGGAAAGCTAGTAATGTTTTCAGGTGACCAGGACTTCAGTACTGGAGCACATGCTCTATTGAACAAGGATTGTGAGCTCGGGCGAGGTGGGTTTGGAGCAGTCTACCGAACTGTACTAGCCGACGGCTGCCCGGTTGCAATCAAGAAACTCACCGTCTCAAGCCTCGTCAAATCCCAAGAAGATTTCGAACGGGAAGTGAAGAAGCTGGGAAAAGTTAGGCATCAAAATTTGGTTGCTCTGGAAGGTTATTACTGGACCCCATCACTACAACTTCTTATCTATGAATTCGTCTCGGGAGGTAGTTTATACAAGCAACTCCATGAGCAAACCGGACCAAACATCCTTTCATGGGATGAGCGGTTCAATATAATTCTCGGGACGGCTAAGAGCTTGACCCACTTGCACCAAAAGAACATAATCCACTACAATATCAAATCTAGCAATGTCTTGATAGATGGCTCAGGCGAGCCCAAGGTTGGAGATTTTGGGCTGGCTCAGTTGTTGCCGATGCTGGACCGGTATGTTTTAAGCAGCAAGATTCAGAGCGCACTTGGCTACATGGCTCCAGAATTTGCATGCAGAACGGTTAAGATAACGGAGAAATGTGATGTGTATGGGTTTGGGGTTTTGGTTCTAGAAGTGGTTACGGGGAAGAGACCAGTGGAGTACATGGAAGATGATGTGGTGGTGCTTTGTGATATGGTGAGAGGAGCGCTTGAAGAGTGTAGGGTGGAGGAATGTATTGATGCAAGGCTTCAGGGGAATTTTCCAGTGGAGGAGGTAATTCCAGTCATGAAGTTGGGTTTGATTTGTACGTCTCAAGTACCGTCGAATCGGCCGGATATGGGAGAGGTGGTTAATATATTGGAGCTAATCAGGTGTCCTTCAGAAAGCCAAGAAGAGTGA 2505 44.11 MDLSGNSLSGPIPDSFFNQCGLLRTIYLGKNKFSGEIPSSLASCSSLASLDLSGNVFSGSVPSGIWSLTGLRLLDLSDNMLEGEIGNEIEGMTNIRAINLSKNRFSGRVPDGIGSCLLMRSIDLSENYFSGILPETMRKLALCDSLSLHGNSFDGQIPYWIIEMKSLETLDFSGNRFAGPIPSSFGNLQNLKVLNFSSNVLTGSLPESMIQCENLLVLDLSSNSLTGDLSRWIYRLISQTAVLLESEQSRSINLQVLDLSQNEFLGEIAPEIQVLDSLQFLNLSGNSLVGHIPETVGDLKVLSILDLSRNKLNGSIPKGIGGAVSLKELRLEMNFLVGEIPSSIGNCSALTTLIISQNKVSGPIPTALSELTDLRDVDLSSNNLNGTLPKQLANLPNLLTFNISHNNLQGELPSGGFFNTISPSSVSGNPFLCGSVVKKSCPAVLPKPIVLNPNSSSDSTSSTSLPTKLGHKRIILSISALIAIAAASAIIIGVIAISVLNLHVRSTTSQSAAALALSSGEDYSRSPTTDANSGKLVMFSGDQDFSTGAHALLNKDCELGRGGFGAVYRTVLADGCPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEQTGPNILSWDERFNIILGTAKSLTHLHQKNIIHYNIKSSNVLIDGSGEPKVGDFGLAQLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEECRVEECIDARLQGNFPVEEVIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSESQEE 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3682084 3686090 - Conep15aG0070000.1 Cone15ag0686 453814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0686 834 Gene3D Transferase(Phosphotransferase) domain 1 630 834 - -
Cone15ag0686 834 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 180 - -
Cone15ag0686 834 Gene3D Ribonuclease Inhibitor 1 146 IPR032675 -
Cone15ag0686 834 Pfam Leucine Rich Repeat 302 322 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 23 44 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 46 68 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 2 18 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 374 395 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 Pfam Leucine Rich Repeat 277 299 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 547 629 - -
Cone15ag0686 834 SUPERFAMILY Protein kinase-like (PK-like) 556 826 IPR011009 -
Cone15ag0686 834 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 184 445 - -
Cone15ag0686 834 SUPERFAMILY L domain-like 146 447 - -
Cone15ag0686 834 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 85 - -
Cone15ag0686 834 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515(InterPro)
Cone15ag0686 834 ProSiteProfiles Protein kinase domain profile. 553 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0686 834 PANTHER OS05G0588300 PROTEIN 119 242 IPR050994 -
Cone15ag0686 834 SMART LRR_typ_2 395 419 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 92 116 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 299 323 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 164 187 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 275 298 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 371 394 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 188 212 IPR003591 -
Cone15ag0686 834 SMART LRR_typ_2 68 91 IPR003591 -
Cone15ag0686 834 Pfam Protein tyrosine and serine/threonine kinase 555 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0686 834 Gene3D Ribonuclease Inhibitor 147 444 IPR032675 -
Cone15ag0686 834 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 630 831 - -
Cone15ag0686 834 SUPERFAMILY L domain-like 2 244 - -
Cone15ag0686 834 ProSitePatterns Protein kinases ATP-binding region signature. 559 582 IPR017441 GO:0005524(InterPro)
Cone15ag0686 834 CDD STKc_IRAK 559 825 - -
Cone15ag0686 834 Gene3D Phosphorylase Kinase; domain 1 544 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0686 Cone-Chr15:3682084 Cone19ag1453 Cone-Chr19:9435329 8.23E-196 dispersed
Cone1ag1578 Cone-Chr1:57478311 Cone15ag0686 Cone-Chr15:3682084 4.54E-47 wgd
Cone14ag0675 Cone-Chr14:3469790 Cone15ag0686 Cone-Chr15:3682084 2.08E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82147 PF13920 zf-C3HC4_3 6.00E-08 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0686 - - - 0.0