Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0687 ATGGTGATCAAGAAAGGCAATAAGGCTGAGAAAGAGAAGTTACAGACGGAGGAGAAGGCGGCGGCGAAGAAGATTGAGAAGGGAATGCAACTCGGAAAGTACGAGCTGGGAAGGACGCTTGGAGAAGGAAACTTCGGAAAAGTTAAATACGCTAAGAACATCGAGACTGGCCAGCCTTTCGCTGTTAAGATCCTCGAGAAGAGCAAAATCATCAGCCTTAATATCACCGATCAGATCAAGAGGGAAATAGCTACACTGAAGCTCCTTAAACATCCAAACATCGTCCGATTATATGAGGTTTTGGCCAGTAAAAACAAGATCTACATGGTCCTTGAGTATGTGAATGGTGGGGAACTGTTTGATAGAATAGCATCCAAGGGAAGACTATCAGAAGGTCAAGGAAGGAAGCCCTTTCAACAGTTGATCGACGCAGTAAGCTACTGTCACAAAAAGGGTGTTTTCCACAGGGATCTCAAGTTGGAGAATGTACTTGTGGATGCCAAGGGGAACATAAAGATATCAGATTTTGGCCTCAGTGCATTACCCCAACATTTTAGGGTAAGAGTACTGACCAATGACAAATTATGCTTGCATGAAAATTACATTTTACATGCAGAACCAGATCATTTTCCCTTAAAAACTCAGGATGATGGGTTGCTTCATACGACCTGTGGAAGTCCCAACTACGTTGCACCAGAAATTCTTGCTAATAGAGGGTACAATGGTGCCACCTCAGACATATGGTCGTGTGGAGTCATATTGTATGTAATTCTTACCGGAAATCTCCCTTTTGAGGACAGAAATCTTGTCGTTCTGTATCAGAAGATATTCAAGGGGGATGTTCCGGCTCCGAAGCGACTATCCCCTGGGGTGCAGAACCTGATAAGGAAGATTCTTGACCCCAATCCGAAAACTCGTATTACTATAGCTGGTATTAGAGCAGATGAATGGTTTAACCAGGGCTATAATCCTTCTCCTCCCTGCCTTGATGAAGAAGAATATCATGATCAATATCGAGATTATCATGGTGATATACCCTTTGTCCAAGGATCAGATAATCTAGAGTCTGCCATCTCACGGAATGATGTGTTGACTGAAGGGGAAAGAAGTCCAGAATCTCCCACCCTCATAAATGCCTTTGAGTTAATTGGAATGTCCTCATGCCTAGACCTTTCTGGCTTCTTTGAGAAGGAGGATGTTTCCGAAAGGAAGATGAGATTTACATCCAATCGTTCGGCCAAATATCTGCTGGAGAGGATAGAAGATCTCGTGAAGGAGATGGGGTTTTGCGTCCATAGGAGAAACGGAAGGTTGAAAGTGATGCAAGGAGAGCACAAGGATCAAAAGCTCAGTCCAGGAAGCCTCTTAGTTGCAGCAGAGGTATTTGAGATAAGTCCATCATTGAATGTCGTCGAACTAAGAAAATCGTCTGGAGATTCATCGGTTTATAGACAGCTGTGTAAGAGGATATCAAATGATCTGGGGGACCCTTCCAGCCAAGAGCTAGTTAGCAGTCCTAACTAA 1524 43.7 MVIKKGNKAEKEKLQTEEKAAAKKIEKGMQLGKYELGRTLGEGNFGKVKYAKNIETGQPFAVKILEKSKIISLNITDQIKREIATLKLLKHPNIVRLYEVLASKNKIYMVLEYVNGGELFDRIASKGRLSEGQGRKPFQQLIDAVSYCHKKGVFHRDLKLENVLVDAKGNIKISDFGLSALPQHFRVRVLTNDKLCLHENYILHAEPDHFPLKTQDDGLLHTTCGSPNYVAPEILANRGYNGATSDIWSCGVILYVILTGNLPFEDRNLVVLYQKIFKGDVPAPKRLSPGVQNLIRKILDPNPKTRITIAGIRADEWFNQGYNPSPPCLDEEEYHDQYRDYHGDIPFVQGSDNLESAISRNDVLTEGERSPESPTLINAFELIGMSSCLDLSGFFEKEDVSERKMRFTSNRSAKYLLERIEDLVKEMGFCVHRRNGRLKVMQGEHKDQKLSPGSLLVAAEVFEISPSLNVVELRKSSGDSSVYRQLCKRISNDLGDPSSQELVSSPN 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3700415 3704152 + Conep15aG0070100.1 Cone15ag0687 453815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0687 507 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0687 507 FunFam Non-specific serine/threonine protein kinase 374 497 - -
Cone15ag0687 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0687 507 FunFam Non-specific serine/threonine protein kinase 25 113 - -
Cone15ag0687 507 Gene3D Kinase associated domain 1, KA1 371 497 - -
Cone15ag0687 507 SUPERFAMILY Protein kinase-like (PK-like) 31 339 IPR011009 -
Cone15ag0687 507 ProSiteProfiles NAF domain profile. 372 396 IPR018451 GO:0007165(InterPro)
Cone15ag0687 507 CDD CIPK_C 378 489 - -
Cone15ag0687 507 Coils Coil 7 27 - -
Cone15ag0687 507 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524(InterPro)
Cone15ag0687 507 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0687 507 Pfam NAF domain 374 432 IPR004041 GO:0007165(InterPro)
Cone15ag0687 507 Gene3D Transferase(Phosphotransferase) domain 1 24 365 - -
Cone15ag0687 507 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 484 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone15ag0687 507 FunFam Maternal embryonic leucine zipper kinase 26 196 - -
Cone15ag0687 507 SMART serkin_6 34 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0687 Cone-Chr15:3700415 Cone6ag1118 Cone-Chr6:7140717 1.32E-148 dispersed
Cone1ag0276 Cone-Chr1:1872727 Cone15ag0687 Cone-Chr15:3700415 3.61E-110 wgd
Cone14ag0676 Cone-Chr14:3489720 Cone15ag0687 Cone-Chr15:3700415 2.87E-307 wgd
Cone15ag0687 Cone-Chr15:3700415 Cone4ag0084 Cone-Chr4:406201 7.66E-112 wgd
Cone15ag0687 Cone-Chr15:3700415 Cone7ag0046 Cone-Chr7:199505 4.76E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82148 PF13920 zf-C3HC4_3 6.00E-08 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0687 K07198 - cit:102613698 641.343