Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0688 ATGGCCCCATTATCGAGAGGTCTCATTTCTCGTTTCCGTCTTCTATCTATCAAAACCCCCATTCATGGTGGTACCTGTACAACTACATCCTCATCGCCGCCGTCTCCATTTTACTACTACTTTTCTCGAAGCTTTAGCTCGGAGCTTTTGATAGATTCCGATGAGATCGTCGACTCGGGATCGTCTTCGATCATCGAAGCCAAGCCCGGAGTTATGACCCCTAACTCAAAGCGGACTGGTGTTATTGCGCTCAAGTGTGGAATGAGGGCGCTCTGGGACAAATGGGGTGAGAGGGTTCCGATCACTGTACTATGGGTCGACGATAACATCGTCTCTCAGGTCAAGACTATTGACAAGGAAGGCATCACTGCTCTGCAGATTGGTTATGGGCAGAAGAAAGAAAAGCATTTGACGAAACCTGAAGTTGGTCATTTTAGGGCTCAAGGGGTACCTCTTAAGAGGAAGTTGAGGGAGTTTCCTGTCACTCAAGATGCACTTCTTCCAGTTGGCACTCCAATTGGCGTGCGTCACTTTGTTCCTGGCCAATATGTTGATGTGACCGGAATCACAAGGGGAAAGGGTTTTCAGGGTGTGATGAAAAAATATGGCTTTAAGGGAATGCCAGCATCTCATGGTGCGTCATTGTCACATCGAAGTCTTGGGTCTACTGGTCAGAGAGATACTCCTGGAAGGGTTTTTAAAGGCAAAAAGATGCCTGGGCGTATGGGTGGGAAACAGAGAACAGTCAAGAATGTATGGGTTTACAAAATTGATCCTGCAAGGAACATGATGTGGGTTAGAGGACAAGTACCAGGGGCTGAAGGGAACTTTGTGTTCATAAAAGATGCTGTCTACAAGAAACCGGACATTTCACAGCTTCCATTCCCCACGTACTTTCAAACAGATGAGGAGGAAGACTTGCAAGAGATGGTTGCTGATCTTGGAGAAGTAGATCCATTTATGGTGGCTGATTGA 975 46.77 MAPLSRGLISRFRLLSIKTPIHGGTCTTTSSSPPSPFYYYFSRSFSSELLIDSDEIVDSGSSSIIEAKPGVMTPNSKRTGVIALKCGMRALWDKWGERVPITVLWVDDNIVSQVKTIDKEGITALQIGYGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTQDALLPVGTPIGVRHFVPGQYVDVTGITRGKGFQGVMKKYGFKGMPASHGASLSHRSLGSTGQRDTPGRVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNMMWVRGQVPGAEGNFVFIKDAVYKKPDISQLPFPTYFQTDEEEDLQEMVADLGEVDPFMVAD 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3704573 3707005 + Conep15aG0070200.1 Cone15ag0688 453816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0688 324 FunFam 50S ribosomal protein L3 205 286 - -
Cone15ag0688 324 Hamap Large ribosomal subunit protein uL3 [rplC]. 78 284 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone15ag0688 324 NCBIfam 50S ribosomal protein L3 80 281 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone15ag0688 324 MobiDBLite consensus disorder prediction 213 244 - -
Cone15ag0688 324 Pfam Ribosomal protein L3 175 259 IPR000597 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone15ag0688 324 PANTHER 50S RIBOSOMAL PROTEIN L3 60 313 IPR019927 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005762(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone15ag0688 324 Gene3D - 110 172 - -
Cone15ag0688 324 Gene3D Translation factors 203 287 - -
Cone15ag0688 324 SUPERFAMILY Translation proteins 73 303 IPR009000 -
Cone15ag0688 324 FunFam 50S ribosomal protein L3 108 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0688 K02906 - - rcu:8261351 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0317 Cone-Chr15:1452303 Cone15ag0688 Cone-Chr15:3704573 2.52E-46 dispersed
Cone14ag0677 Cone-Chr14:3499354 Cone15ag0688 Cone-Chr15:3704573 4.37E-215 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30