Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0692 ATGGCGGCTAAGAAACTCTCCGACTCGTTCTCCAAGATGTTGATCGACGAGGTTCAGAAATGGGGCTGCATGAAGCAGACAGGCGTCAGCTTGCGCTACATGATGGAGTTCGGATCCAAGCCCACCGAGCGCAACCTCCTCTTCTCCGCTGCCTTCCTCCACAAGGAGCTCCCCATTCGCATCGCCAGGCGTGCTATCGAACTCGAGTCCCTACCTTACGGCCTCTCTGAAAAGCCTGCCGTTTTAAAGGTCCGAGACTGGTATTTAGATTCATTTCGTGATCTACGGTCCTTTCCTGAGATCAAGAATTCACAAGACGAGAAGGAATTCACGCAGATGATCAAGGCGATTAAGCACGTGGAGTTGCATAATCCAAACCCTCCACCTCACTGCATTGGGTACATTCACACGAAAATGTCCCCTGTGGAGGTTGCTCGGAATGCTAGCGAGGATGCTCGTGCCATTTGCTTTCGTGAGTACGGCTCTGCGCCAGAAGTTATCATATACGGAGACCCGAGCTTCACATTTCCGTATGTTCTGTTGCACTTGCATCTGATGGTTTTCGAGCTTGTAAAGAACTCATTGCGTGCAGTGCAAGAGCGGTTCATGGATTTGGACAAGGTGGCGCCGCCTGTCAGGATAATAGTAGCGGAAGGGATCGAGGATGTGACTATTAAGGTCTCGGATGAGGGTGGAGGGATTCGAAGAAGTGATTTACCAAAAATATTTACGTATCTTTACAGCACTGCAAGGAATCCATTGGATGATGAAGAGGAGTTGAATAGTAGCCATCCGGATACTGTGACCACTATGGCTGGGTATGGATATGGGCTTCCAATCAGCCGATTGTATGCACGCTATTTTGGTGGGGATATGCAGATCATTTCCATGGAAGGATATGGGACTGATGCATATCTGCACTTGTCCCGGCTAGGCGATTCGCAAGAACCTCTGCCATAG 960 49.69 MAAKKLSDSFSKMLIDEVQKWGCMKQTGVSLRYMMEFGSKPTERNLLFSAAFLHKELPIRIARRAIELESLPYGLSEKPAVLKVRDWYLDSFRDLRSFPEIKNSQDEKEFTQMIKAIKHVELHNPNPPPHCIGYIHTKMSPVEVARNASEDARAICFREYGSAPEVIIYGDPSFTFPYVLLHLHLMVFELVKNSLRAVQERFMDLDKVAPPVRIIVAEGIEDVTIKVSDEGGGIRRSDLPKIFTYLYSTARNPLDDEEELNSSHPDTVTTMAGYGYGLPISRLYARYFGGDMQIISMEGYGTDAYLHLSRLGDSQEPLP 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3731348 3733429 - Conep15aG0070600.1 Cone15ag0692 453820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0692 319 Gene3D - 16 140 IPR036784 -
Cone15ag0692 319 Gene3D - 141 318 IPR036890 -
Cone15ag0692 319 PANTHER PYRUVATE DEHYDROGENASE KINASE 118 318 IPR039028 GO:0004672(InterPro)|GO:0004740(PANTHER)|GO:0005739(PANTHER)|GO:0006468(PANTHER)|GO:0010906(PANTHER)
Cone15ag0692 319 FunFam [Pyruvate dehydrogenase (Acetyl-transferring)] kinase mitochondrial 138 318 - -
Cone15ag0692 319 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 182 308 IPR003594 -
Cone15ag0692 319 SMART HKATPase_4 178 312 IPR003594 -
Cone15ag0692 319 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 29 119 IPR018955 -
Cone15ag0692 319 ProSiteProfiles Histidine kinase domain profile. 183 312 IPR005467 -
Cone15ag0692 319 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 136 308 IPR036890 -
Cone15ag0692 319 CDD HATPase_PDK-like 140 309 - -
Cone15ag0692 319 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 119 IPR036784 -
Cone15ag0692 319 PRINTS Bacterial sensor protein C-terminal signature 296 309 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone15ag0692 319 PRINTS Bacterial sensor protein C-terminal signature 223 237 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone15ag0692 319 PRINTS Bacterial sensor protein C-terminal signature 272 290 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0692 K00898 - - rcu:8261345 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0692 Cone-Chr15:3731348 Cone16ag0595 Cone-Chr16:7749047 2.73E-191 dispersed
Cone14ag0680 Cone-Chr14:3512390 Cone15ag0692 Cone-Chr15:3731348 2.45E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49