Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0697 ATGGCAGAGAGTAGAAGATATGTTCCAATTCAACATTTAGACCTTGTACAAATTCTGCAGGAAGCTCAGCATCGATGGCTCCGGCCAACAGAAATCTGTGAGATACTTCACAACCATAAAAAATTTCAGCTAACACCAGATCCCCCAGTTCAACCTCCAGCTGGTTCTTTGTTCCTATTTGATCGGAAAGCTCTTCGATATTTTCGTAAAGATGGCCATAGATGGAGAAAGAAAAAAGATGGAAAAACTGTCAAAGAAGCTCATGAAAAGTTAAAGGCTGGTAGCGTGGATGTCCTCCATTGTTACTACGCCCATGGGGAAGATAATGAGAACTTCCAGAGACGAAGTTATTGGATGCTTGATAGGCAATTAGAGCACATAGTTCTTGTCCATTACAGGGAAGTGAAGGAGGGGTACAAGTCTAGCATCTCTCGTTTACTACCAGATTTGGGAGCACAGGTGGCTAACCATCAAAGCAGTTCACCTATCTCCCCACAAGCAAATTTGTTCGTTCCTACAGTTCAGACTTCTTATTCATCGAGTCCAAATTTAATCGATTGGAATGGACATCTATTTCCTTCCAAATTTGAGGATGGAGATTCTGGTGGTGGCCGCAATTCTGTAGCCTCTTCTATAACTCAACCTCTTTTTGGTTCTGCTGTGGATGATACTTCTTTGCTTGGACACAGAGTATCTGGATTTCCTGACATATCCAGGGAAAAGTCTGGATCCTGGTGTGGGAGACCCAAACTTTCACATGGCGTGGAATCACCGAGGTGGGCTGAAATTCACAACTTAGAAAGAAGTAGAGCCGATACACTGCACGAACATAAATTGTTTGCTGAACAACCTAGTGAAGCTGATTTTGTAGCTCGTAAATTAACTGATGCCAGATTGATTGGCGGTGGCATAGTCCATGGAATTTTGACCTGTGATAATAGTTTGATCAATGATGCAGACATCCCAGCACTTTCTCAGAGAGTGATTCAGGTTCCCCAGGAGCATACTTTCACTTCAGTTTATCCAGTGTTTCATGATGGATCTAATTCTCAGACAGTTCTTGATTCTAATATGCAAAATGACAAGGAATCAAAGGACAGTGTGAATAATGATGCAGCAGAACTGAAGAAACTTGACAGCTTTGGCCGATGGATGGATAAGGAAATTGGCGGAGACTGTGATGGTTCCTTGATGGCCTCAGACTCTGGTAATTATTGGAGTACACTTGATGCCGAAACTGATGAAAAGGAAGTTTCTAGTTTATCACACCATATGCAGTTGGACATTGATTCTTTGGGTCCTTCTCTTTCCCAGGATCAACTATTTACTATCTGTGATTTTTCACCAGATTGGGCATATTCTGGGGTTGAAACAAAGGTTTTAATTATTGGGGGCTTTTTGGGGAGCAAAAAGCTTTCAACTGATACCAAGTGGGGATGTATGTTTGGTGAATTTGAGGTTTCTGCTGAAGTTCTGACAGACAATGTTCTTCGATGTCAAACACCTTTTCATGCTCCTGGGCGTGTTCCATTTTATGTGACTTGCAGTAATAGGTTAGCCTGCAGTGAAGTTAGAGAATTTGAATACCGTGAAAAGCCAGAAGGAATTTTATCTTCTACTGCTATCAAAATTGCAGCGGACGATAAAATACGCTTTCAAATGCGTCTTACAAGATTATTAAATTTGGGCCCAGAGAAGAAGTGGTTGGAATGCTCTATAGAGGAATGCAAAAAATGCAAGATTAAGAACACCATTTGTTCTTTGCGAAAGGGGATTGAGAAACATTGGAAAACGGTTCAAGGGACTTGTATTGCATGCAGAGATGATGATTTGACGCATAATGAGGTTCTGATTCAGAATTTGCTGAAGGGTAGACTTTTTGAGTGGCTGGTCTGTAAAGTACACCAAGAGGGTGGTAGGGGGCCACATGTTCTGGATGATGAAGGCCAAGGTGTTATACATTTGGCTGCGGCTCTTGGTTATGAATGGGCTATGGATCCCATAGTTCTTTCTGGTGTCAGCCCCAATTTCAGGGATTCACGTGGAAGAACAGCTCTTCATTGGGCATCACACTATGGAAGGGAGGAAACAGTCATTGCACTGGTTAGGTTGGGTGTGGCCCCAGGTGCTGTAGATGACCCTACACATACATTTCCTGGAGGACAAACAGCTGCTGATTTGGCATCAAGTGGAGGGCATAAAGGAATTGCTGGATATTTGGCAGAAGCTGATCTCACAACTCACTTTTCTATTTTGACGGTAAATGAATATTTGACAGATTATGATCCTATGGCCCTTTCTACCGAGGAGGCTATTCAATATTCAGATCAAGCTACCCCGTCACATTTCGCTACAGATAACATTCCCCTAAAAGGCTCTCTTGCCGCAGTCAGGAAATCAACTCATGCTGCTGCTCTCATCCATGCTGCCTTCCGAGCCCGTTCATTCTGTCATAGACAGTTAATTAAAAACAGCAACGATATTCCTCAAGTTTCACTTGACCTAGTTGCTCTTGGTCATGTGGATAAGGTCCGTAAGATAAATAATTATGAAGATTATCTTCATGTTGCAGCTATAAGGATTCAACAAAAGTATCGTGGTTGGAAGGGACGAAAAGATTTTCTAAAGATACGGAACCGAATAGTAAAAATTCAGGCTCGTGTGAGGGGACATCAAGTCCGTAAGCAGTATAAGAAGGTTGTATGGTCTGTTGGTATTGTGGAAAAGGCAATACTACGTTGGAGGCGAAAGCACAATGGTTTAAGGGGGTTCCGGGTAGAAAAAGCAATTGGAACATTCAGTCTGGATATTGAGAAAACCGATGAATACGACTTTTTACAAATTGCTCGGAAATTAAAATGGGCTGATGTGGAAAGAGCTCTTGCGAGAGTCAAGTCCATGGCTCGTCACCCGGAAGCAAGAGAACAGTACATGAGACTGGTATCAAGATTCAAAAATTCTAATATGAATAGTGATGAAGAAGGCAATACCTCACAGCAAATGGACAATGCACTACATAAGTGA 3024 42.16 MAESRRYVPIQHLDLVQILQEAQHRWLRPTEICEILHNHKKFQLTPDPPVQPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDRQLEHIVLVHYREVKEGYKSSISRLLPDLGAQVANHQSSSPISPQANLFVPTVQTSYSSSPNLIDWNGHLFPSKFEDGDSGGGRNSVASSITQPLFGSAVDDTSLLGHRVSGFPDISREKSGSWCGRPKLSHGVESPRWAEIHNLERSRADTLHEHKLFAEQPSEADFVARKLTDARLIGGGIVHGILTCDNSLINDADIPALSQRVIQVPQEHTFTSVYPVFHDGSNSQTVLDSNMQNDKESKDSVNNDAAELKKLDSFGRWMDKEIGGDCDGSLMASDSGNYWSTLDAETDEKEVSSLSHHMQLDIDSLGPSLSQDQLFTICDFSPDWAYSGVETKVLIIGGFLGSKKLSTDTKWGCMFGEFEVSAEVLTDNVLRCQTPFHAPGRVPFYVTCSNRLACSEVREFEYREKPEGILSSTAIKIAADDKIRFQMRLTRLLNLGPEKKWLECSIEECKKCKIKNTICSLRKGIEKHWKTVQGTCIACRDDDLTHNEVLIQNLLKGRLFEWLVCKVHQEGGRGPHVLDDEGQGVIHLAAALGYEWAMDPIVLSGVSPNFRDSRGRTALHWASHYGREETVIALVRLGVAPGAVDDPTHTFPGGQTAADLASSGGHKGIAGYLAEADLTTHFSILTVNEYLTDYDPMALSTEEAIQYSDQATPSHFATDNIPLKGSLAAVRKSTHAAALIHAAFRARSFCHRQLIKNSNDIPQVSLDLVALGHVDKVRKINNYEDYLHVAAIRIQQKYRGWKGRKDFLKIRNRIVKIQARVRGHQVRKQYKKVVWSVGIVEKAILRWRRKHNGLRGFRVEKAIGTFSLDIEKTDEYDFLQIARKLKWADVERALARVKSMARHPEAREQYMRLVSRFKNSNMNSDEEGNTSQQMDNALHK 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3763965 3771264 + Conep15aG0071100.1 Cone15ag0697 453825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0697 1007 CDD IPT 443 531 - -
Cone15ag0697 1007 ProSiteProfiles IQ motif profile. 854 883 - -
Cone15ag0697 1007 SUPERFAMILY Ankyrin repeat 611 743 IPR036770 -
Cone15ag0697 1007 ProSiteProfiles IQ motif profile. 877 901 - -
Cone15ag0697 1007 SMART iq_5 853 875 IPR000048 GO:0005515(InterPro)
Cone15ag0697 1007 SMART iq_5 876 898 IPR000048 GO:0005515(InterPro)
Cone15ag0697 1007 MobiDBLite consensus disorder prediction 988 1007 - -
Cone15ag0697 1007 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone15ag0697 1007 SUPERFAMILY E set domains 443 530 IPR014756 -
Cone15ag0697 1007 ProSiteProfiles Ankyrin repeat region circular profile. 681 713 - -
Cone15ag0697 1007 ProSiteProfiles Ankyrin repeat profile. 681 713 IPR002110 GO:0005515(InterPro)
Cone15ag0697 1007 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone15ag0697 1007 Gene3D Immunoglobulins 437 535 IPR013783 -
Cone15ag0697 1007 Coils Coil 358 378 - -
Cone15ag0697 1007 SMART ANK_2a 720 749 IPR002110 GO:0005515(InterPro)
Cone15ag0697 1007 SMART ANK_2a 681 710 IPR002110 GO:0005515(InterPro)
Cone15ag0697 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 904 IPR027417 -
Cone15ag0697 1007 Gene3D - 852 901 - -
Cone15ag0697 1007 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 993 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone15ag0697 1007 Pfam IQ calmodulin-binding motif 879 898 IPR000048 GO:0005515(InterPro)
Cone15ag0697 1007 Pfam IQ calmodulin-binding motif 856 874 IPR000048 GO:0005515(InterPro)
Cone15ag0697 1007 Pfam Ankyrin repeats (3 copies) 653 745 IPR002110 GO:0005515(InterPro)
Cone15ag0697 1007 Gene3D - 602 746 IPR036770 -
Cone15ag0697 1007 FunFam Calmodulin-binding transcription activator 2 853 901 - -
Cone15ag0697 1007 FunFam Calmodulin-binding transcription activator 2 437 534 - -
Cone15ag0697 1007 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0697 K21596 - - cit:102621325 1234.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0616 Cone-Chr15:3199290 Cone15ag0697 Cone-Chr15:3763965 4.60E-138 dispersed
Cone15ag0697 Cone-Chr15:3763965 Cone8ag0227 Cone-Chr8:1250902 4.10E-185 dispersed
Cone14ag0685 Cone-Chr14:3538708 Cone15ag0697 Cone-Chr15:3763965 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44871 PF00009 GTP_EFTU 2.60E-61 CL0023 Cone TF