Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0700 ATGGAGATGTACAATTTTTCTGGATTTGGAAATGCAGAAAATTATATGATTCAAGGTGCAGAAACAGATTTTCAATTGACGAGTCCACTTCCTGAACAAACTGAAACCATGTACAATGAAGGACCTGCCCCTGAGTTTATGGTAGACCCTGGCATGTATTATCCTGCTGCCAGCAACTATGGTTTTTACTGTACAGGATTTGAAGCACCCGGCGAATGGGAGGACCAGAATAGGATTTTTGGTGTACATGCTCCAGATGCCCAGTACCCATTGCTTTCTCAGGGTGCACAAAGTGAAAGTTTGTCTTATGTATATTATACACCTACCTATGGATATGCACAGTCTCAATACAATCCATACAATCCTTACATACATGGTGCTGTCATAGGACCTGAGGGCCCATATGTTGGGTCTCAACAGTATTATACCATCCCTCCCTATCAAAGCTCTGTCTCTTCTTCTCCCTATGTCCCTGTTGTTGTTCAGCCAGATATTATCCCAAATAGTTCACCTGACACCTTTATTGACCCTTCAAGTAATAGATCAAATGGAAATGGAAGAGGGACAAAATATGCTACTTCTGGAAGCTTTTATAGGAATCCCTCTAAAACTGCTTCAAACCAGACAAGTTCCTTAGCCCGGATATCAGAAAGGGCGCGAGCTAATGTTGGACCAAGCAATCAATCTGCGATGCACGGAAGCATTTCAGCTGGGAGTTTCCCGGGTTCAGCTTCATCACATGTTTTTCAGGGAAGAAGTCGTTCTGGCTCAAATCAGTCCGCAGATAAAATTGCAAATGGAAAGGTTGTCCCACAACAGAGCCAAATGAAAGTAGCTCCTCCCATCAACAGTGGCATAACTGAATTTGGAGCAAGTGCTCATGAACACAATGAAGTTGGTAAATTTCGACCCAAGATCCATGTTGGTAGAGCTCTGAATGATGCTAATGTTAATTCAGATTCATTGGGTGAGCAGAATCGCGGCCCTAGAATCAACAGATCAAAAAACCAACTAGCTGTCAAAGCCTACACAACGAAGGCTGGAGATAGCAATGCAGAAGGAAACATCATTATCTACACCGATCAGTATAACAAAGATGACTTCCCTCTGGATTACGAAGATGCAAAGTTTTTCGTTATAAAATCATACAGTGAGGATGATGTACATAAGAGCATTAAATATAACGTTTGGTCTTCTACACCCCATGGTAACAAGAAACTGAATAGTGCTTATGAAGATGCAAAGAGAATATCTGTAGCAAAATCTAGAGGCTGTCCTATCTTCCTCTTCTTTTCGGTCAATGCAAGTGGTCAATTCTGTGGTGTTGCAGAGATGATTGGTCCAGTTGACTTCAATAAAGATATGGATTTTTGGCAGCAGGATAAATGGAGTGGAACCTTCCCTGTTAAGTGGCACATAATTAAAGATATACAGAACGTGAACTTTAGGCACATCTTATTAGAAAACAATGAAAACAAGCCAGTGACCAATAGTAGAGATACACAAGAGATAACATACAAGAAAGGTGTGGAGATGCTAAAAACATTCAAAAGCCACACACTGAAGACCTCTTTACTGGACGACTTCATATACTATGAAAACCGTCAGAAAATCATGCAGGATGAAAAAACCAGGTCACTTACTAAAAGGTTTGAGACTCCATATTTCTTACCTGCATTGGCTCATGCTACCCGGCAGCTAAATACTGTTGCTGAGCTTTCACAGAGTGAAGACAGGAAAGTGAACAAAGTAAATGATGACCTAAGCAGCTCAAAAAGGAGCTTGCCCTCTACAAATTCTGATGCCATTGACATTACAACTCCTAAGGGGGATTCTGAAAAAGTTGCCATTGAGATGAAAGATGATCTTACTTCGACAATGAAGATTGGCTCTCTTAGTATTAACCCAAAGCAAGAGGCTGGTTTGAAGTTGTCCCCGGTTTCTACTAATTCAAAATCGACTGAGGTTGTTACAGTTGGCTCAGTGTCCATTAAAGTTCCTGGAGGTACTGAATCTTCTAGTATTCTAACGGTCGGAACGATTCCTCTCGATCCTAGAGCCTTGCAGGTCAACAAAGAGGATGCTGTCAAAAATGGGTTTCCTCGTAAATAA 2112 41.24 MEMYNFSGFGNAENYMIQGAETDFQLTSPLPEQTETMYNEGPAPEFMVDPGMYYPAASNYGFYCTGFEAPGEWEDQNRIFGVHAPDAQYPLLSQGAQSESLSYVYYTPTYGYAQSQYNPYNPYIHGAVIGPEGPYVGSQQYYTIPPYQSSVSSSPYVPVVVQPDIIPNSSPDTFIDPSSNRSNGNGRGTKYATSGSFYRNPSKTASNQTSSLARISERARANVGPSNQSAMHGSISAGSFPGSASSHVFQGRSRSGSNQSADKIANGKVVPQQSQMKVAPPINSGITEFGASAHEHNEVGKFRPKIHVGRALNDANVNSDSLGEQNRGPRINRSKNQLAVKAYTTKAGDSNAEGNIIIYTDQYNKDDFPLDYEDAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLNSAYEDAKRISVAKSRGCPIFLFFSVNASGQFCGVAEMIGPVDFNKDMDFWQQDKWSGTFPVKWHIIKDIQNVNFRHILLENNENKPVTNSRDTQEITYKKGVEMLKTFKSHTLKTSLLDDFIYYENRQKIMQDEKTRSLTKRFETPYFLPALAHATRQLNTVAELSQSEDRKVNKVNDDLSSSKRSLPSTNSDAIDITTPKGDSEKVAIEMKDDLTSTMKIGSLSINPKQEAGLKLSPVSTNSKSTEVVTVGSVSIKVPGGTESSSILTVGTIPLDPRALQVNKEDAVKNGFPRK 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3806209 3810331 + Conep15aG0071400.1 Cone15ag0700 453828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0700 703 MobiDBLite consensus disorder prediction 576 607 - -
Cone15ag0700 703 CDD YTH 376 516 IPR007275 GO:0003723(InterPro)
Cone15ag0700 703 MobiDBLite consensus disorder prediction 588 606 - -
Cone15ag0700 703 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 28 591 IPR045168 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0061157(PANTHER)
Cone15ag0700 703 MobiDBLite consensus disorder prediction 168 261 - -
Cone15ag0700 703 Pfam YT521-B-like domain 375 517 IPR007275 GO:0003723(InterPro)
Cone15ag0700 703 Gene3D ph1033 like domains 357 531 - -
Cone15ag0700 703 ProSiteProfiles YTH domain profile. 375 516 IPR007275 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0700 K20102 - - csv:101206750 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0398 Cone-Chr13:3628358 Cone15ag0700 Cone-Chr15:3806209 6.22E-68 dispersed
Cone15ag0700 Cone-Chr15:3806209 Cone18ag0010 Cone-Chr18:77275 5.80E-86 dispersed
Cone14ag0687 Cone-Chr14:3561401 Cone15ag0700 Cone-Chr15:3806209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004548 2 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 42