Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0704 ATGATCGTGAGCCAAGAGACGGTCGCCGAAGCAGAGATTATCTGTGAGCAAACGGTTCCTAATTCTTCTAAACTCGATGTCAAGTACCATATCTGCGTTTCCAAAGAGCATAATGTTCAGATCGATGTGACTCCCTCCTCTTCTCCTCCTATCTTCCGCGAGGTTCGAGCTTCTGAATCGATCTCCACCGACCTATCGCCCTCTGAATCGGTGGTCAGCTGTTCAGATGCAGTTAAAGATGCTACCATGGACCCTTCTGCAGTGAACTTCATCCCAACCATCCGTTCCGGTAGCCATTCAGACATTGGGTCCCGCAGGTCCATGGAGGACGAACACATCTGTATCGACGACCTATCTTCCCACCCTGGATCCCTCCTCAACTGCCCCATGAACACTGCCTTCTACGCATTATTTGACGGCCATGGAGGCCCTGATGCAGCCTCTTTCATCAAAAGAAATGCCATGAGGCTCTTCTTCCAAGATGCTGATCTATCGCAAATGTATGACATAGACTCTGTCTTCTACAAAGCCTTTTTACTAGCAGACCTCGCCTTAGCCAATGAAACCAGTATCAGCACCTATTGTGGAACAACAGCTCTAACCGTCTTAGTCCTCGGGCAAAACTTACTCGTTGCAAATGCTGGTGACTGCAGAGCCGTCCTCTGCCAGAAAGGCATTGCCCTTGACATGTCTCAAGACCACAGGCCAAGTAATGAACTTGAAAGGGAGCGTGTAGAGAGGATGGGTGGTTATATAGATTTTGGGTATCTGAATGGCTGTCTTGGAGTCACCCGGGCTCTTGGTGACTGGCACTTGAAACGACCCATTGGGTCTTCGCCTCTTATTTCCAAACCAGAGGTCCAACAGATTGTGTTAACTGAAGAAGATGAGTTCTTGATCATAGGATGTGATGGGATATGGGACGTGATGTCTAGCCAATATGCAGTCAGTCTTGCCCGAAGAGCATTGAGGAGGCATAATGACCCGCAACAGTGTGCTAAAGAGCTAGTCTCAGAGGCTTTACGGCTTAATACTTCAGATAATCTTACTGTGATCGTGATTTGCTTTACTAGCCTGCCTGCTTTTGCCGCTCCTCAACGTCGAAGATTTAGGATGTGCAGTGGTTCGGAAGATTCTAGAAGCAGGTTGAGGAGCTCGCTAGAGAGCAACTGA 1173 48.42 MIVSQETVAEAEIICEQTVPNSSKLDVKYHICVSKEHNVQIDVTPSSSPPIFREVRASESISTDLSPSESVVSCSDAVKDATMDPSAVNFIPTIRSGSHSDIGSRRSMEDEHICIDDLSSHPGSLLNCPMNTAFYALFDGHGGPDAASFIKRNAMRLFFQDADLSQMYDIDSVFYKAFLLADLALANETSISTYCGTTALTVLVLGQNLLVANAGDCRAVLCQKGIALDMSQDHRPSNELERERVERMGGYIDFGYLNGCLGVTRALGDWHLKRPIGSSPLISKPEVQQIVLTEEDEFLIIGCDGIWDVMSSQYAVSLARRALRRHNDPQQCAKELVSEALRLNTSDNLTVIVICFTSLPAFAAPQRRRFRMCSGSEDSRSRLRSSLESN 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3824156 3826654 + Conep15aG0071800.1 Cone15ag0704 453832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0704 390 ProSiteProfiles PPM-type phosphatase domain profile. 95 356 IPR001932 -
Cone15ag0704 390 PANTHER PROTEIN PHOSPHATASE 2C 70 356 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone15ag0704 390 CDD PP2Cc 94 356 IPR001932 -
Cone15ag0704 390 SMART PP2C_4 85 354 IPR001932 -
Cone15ag0704 390 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169(InterPro)
Cone15ag0704 390 FunFam Probable protein phosphatase 2C 22 78 359 - -
Cone15ag0704 390 SMART PP2C_SIG_2 110 356 IPR001932 -
Cone15ag0704 390 SUPERFAMILY PP2C-like 90 358 IPR036457 -
Cone15ag0704 390 Pfam Protein phosphatase 2C 98 348 IPR001932 -
Cone15ag0704 390 Gene3D - 71 359 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0704 Cone-Chr15:3824156 Cone8ag1336 Cone-Chr8:10770928 7.36E-98 dispersed
Cone15ag0704 Cone-Chr15:3824156 Cone17ag0390 Cone-Chr17:1857864 1.28E-133 wgd
Cone15ag0704 Cone-Chr15:3824156 Cone20ag1024 Cone-Chr20:7163667 4.19E-132 wgd
Cone15ag0704 Cone-Chr15:3824156 Cone7ag0053 Cone-Chr7:230820 2.69E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44872 PF00010 HLH 3.90E-07 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0704 K14803 - mdm:103432165 496.893