Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0714 ATGGCGTCCTTGGGTCAGCAATTCACCGGCCTAAGATGTACTCCTCTCTCCTCATGGAGGCTTTCGAAGAGCTCTTCTTCTTCTTCCCAAGCTCACAAGAAGAACCTATCCATTCGCTCTGCCGTTATTTCTCACCCCATCCCTACTCCACAGACGAGAGAGCGACAAAAACTAAAACAACTCTTCGAGGATGCTTACGAACGGTGCCGTACTATCCCAATGGACGGCGTCTCTTTCACTGCCGATGACTTTCACGCCGTTCTCGAGAAGTATGATTTCGATTCTGAGATTGGAACTAAGGTGAAAGGAACTGTGTTTTGTACTGATCAAAATGGGGCACTAGTCGACATTACTGCTAAGTCATCTGCTTATTTGCCTATTCAAGAAGCATGTATTCACAAAATAAAGCATGTAGAAGAAGCGGGTATTTATCCTGGTGTGAGAGAAGAGTTTGTGATTATTGGAGAAAACGAAGCTGATGATAGTTTGATTCTTAGCTTGAGATCTCTCCAGTACGATCTTGCTTGGGAGCGATGCAGACAGCTTCAAGCTGAGGATGTTGTTGTTAAGGGTAAGGTTATTAGTGCAAACAGAGGTGGAGTAGTAGCTGTTGTGGAAGGCCTTAGAGGGTTTGTTCCTTTCTCACAAATATCAACGAAATCAACTGCAGAGGATCTTCTCGAAAAAGATCTTCCTTTGAAGTTTGTGGAGGTTGATGAAGAACAATCTAGGCTTGTCCTCAGTAACCGAAAGGCTATGGCTGACAGCCAAGCCCAGCTAGGAATTGGGTCAGTGGTCACTGGAACAGTTCAGAGTCTGAAACCATATGGTGCATTCATTGACATTGGTGGCATTAATGGCCTTCTTCATGTCAGTCAAATCAGTCATGATCGTGTATCTGATATAGCAACAGTTCTTCAACCTGGAGACACTCTCAAGGTCATGATTTTGAGCCATGACCGTGAAAGAGGCCGGGTCAGCCTTTCTACCAAAAAGTTGGAGCCTACTCCTGGTGACATGATCCGCAATCCAAAGCTTGTTTTTGAGAAGGCGGAGGAGATGGCCCAAACATTTAGGCAAAGAATTGCTCAAGCTGAAGCTATGGCTCGTGCAGACATGCTTAGATTTCAACCTGAGAGTGGATTGACTTTGAGCTCGGATGGTATATTGAGTCCACTGACAGCTGAGTTGCCTGCTGAGGGTCTTGATTTGAGTGATGTTCCTCCAGCTGAAGAGCCCTCACTGCAGTCATAA 1254 45.45 MASLGQQFTGLRCTPLSSWRLSKSSSSSSQAHKKNLSIRSAVISHPIPTPQTRERQKLKQLFEDAYERCRTIPMDGVSFTADDFHAVLEKYDFDSEIGTKVKGTVFCTDQNGALVDITAKSSAYLPIQEACIHKIKHVEEAGIYPGVREEFVIIGENEADDSLILSLRSLQYDLAWERCRQLQAEDVVVKGKVISANRGGVVAVVEGLRGFVPFSQISTKSTAEDLLEKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILSPLTAELPAEGLDLSDVPPAEEPSLQS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3963298 3966442 + Conep15aG0072800.1 Cone15ag0714 453842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0714 417 ProSiteProfiles S1 domain profile. 263 331 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 Coils Coil 348 368 - -
Cone15ag0714 417 SUPERFAMILY Nucleic acid-binding proteins 262 341 IPR012340 -
Cone15ag0714 417 FunFam 30S ribosomal protein S1, chloroplastic 180 256 - -
Cone15ag0714 417 FunFam 30S ribosomal protein S1 82 179 - -
Cone15ag0714 417 SUPERFAMILY Nucleic acid-binding proteins 181 254 IPR012340 -
Cone15ag0714 417 FunFam 30S ribosomal protein S1 259 338 - -
Cone15ag0714 417 CDD S1_RPS1_repeat_ec2_hs2 186 250 - -
Cone15ag0714 417 SUPERFAMILY Nucleic acid-binding proteins 93 193 IPR012340 -
Cone15ag0714 417 CDD S1_RPS1_repeat_hs4 263 331 - -
Cone15ag0714 417 SMART S1_6 184 250 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 SMART S1_6 96 168 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 SMART S1_6 261 331 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 ProSiteProfiles S1 domain profile. 186 250 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 Pfam S1 RNA binding domain 262 331 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 Pfam S1 RNA binding domain 185 248 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 CDD S1_RPS1_repeat_ec1_hs1 98 168 - -
Cone15ag0714 417 PANTHER 30S RIBOSOMAL PROTEIN S1 44 392 IPR050437 GO:0003729(PANTHER)|GO:0003735(PANTHER)|GO:0006412(PANTHER)|GO:0009570(PANTHER)
Cone15ag0714 417 Gene3D - 257 335 IPR012340 -
Cone15ag0714 417 ProSiteProfiles S1 domain profile. 98 168 IPR003029 GO:0003676(InterPro)
Cone15ag0714 417 Gene3D - 181 256 IPR012340 -
Cone15ag0714 417 Gene3D - 81 180 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0714 K02945 - - csv:101222582 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0714 Cone-Chr15:3963298 Cone7ag0089 Cone-Chr7:387318 3.59E-166 dispersed
Cone16ag0934 Cone-Chr16:9510908 Cone15ag0714 Cone-Chr15:3963298 1.35E-08 transposed
Cone14ag0701 Cone-Chr14:3786694 Cone15ag0714 Cone-Chr15:3963298 3.74E-283 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54