Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0721 ATGCTATGTGTACCATTAGTAAGCTTCGGTGCAGTGGAGTATAAATTGTTTGTTGGCTCTTTAAACAAACAAACTACAGAAAAGGAAGTTGAAGAAATCTTTTCTCCATATGGCCGAGTTGAAGACGTTTACCTCATGCGAGATGAATTTAAGCATAGTCGTGCTATAAAAGGTCTTAGTGGAATCTATACAATGAGAGGTTGTGATCAACCTTTAATTGTCCGGTTTGCTGATCCTAAGAGGCCTAGACCTGGAGATTTAAGGGGACCTTCAGTTGGAGGTCTAGGGTTTGGTCCACGCTTTGAAGCACCAGGGGCAAGACCAATGCTCAATTATGGTGAACCCATGGGGGACCAAAATCCACCAAGTTCCTGGCATCTGATTAGTCCGCCTGCTTTGAAGACATCTTTGAATGCTGGTGTTCGCAGGTTTGAGGGACAATTACCTCCTAGGTCTGGTGACACTGCGCCAACATTGAATTTGCAACAAGTCCATTTCTATGATATTCTACTACTTTTTATTGCTGTAATCAGCTTTCCATTTGCCATCATATTTACTTATGGCATACCTCAAAGTGGTGTTGGAGGCATCCCTTTCAGTTACCGCGCCATTCCACAAGTTCCACCAGGTGGCCAGCAAGTATCACCATTACAAAATCCCATTCAATCACCTCAGAATATGGGTTCCTCCTTTCAGCTAAACCCTCAAGCTCCATCTACTTATTCTCAGACACAAACATCCCTCACAGCAATAGGGCAGTTTATTCAGCCACATAATCCTCTTTCTTCTGGCCAACCTCTTTTCAATCAACCAATGGTTCCACAAAACCGTCTCGGTTTAAGTGCCCCTTTGAGTATTAATTTACAACAACCCCCTTCTGTGGGCCCTCTCAGTAATCAACTGCAGCAAATGGTTCAACCTCCTCAACACTCGCCATCTCAGCTAGCTCAGATGCTGTCACAACAAACCCAAACTCTTAAGGCCAGCTTTCAGTCTTCGCAGCAGACATTCTCTCAGTTGCAGCAACAATTGCAGTCTATGCAGCCGACGAATCAAGGTTTAGCATCACAGCCTAATTCCAAAGCTACTAAACAGCAGCCTCCATGGGCAGGGAATATGCCACATGCAGTTTCCAGCACTGTTCCGACTACAACCACAGAGGTGCCTCCATCCACATCTGGTTTAACTGCAACTCCTCAGACTGTAGCCCCTGTAAAATGTAATTGGACAGAGCACACCTCCCCTGATGATTATAAGTACTATTATAATAGCATGACAGGTGAAAGCAGGTGGGAGAAACCTGAAGAGTTTCTATTGTTTGAGCAAAAGCAACAAAAACCATTAGCTCAGCAGCCTTTAGTCCCATTGCAAACTCAAGTACCATCTGCCCAGCAACCCCCACAAAATCAACTGGCTCAGCTTCAAGTTCAGCATCAATTGCATTTCCGCCAGCACCAGCAGTTACAACAGCCTTCTCTGTCTCCATTGGCCTCTGGAGGACCAGCAGCTCACCAAAACAGGCAGGAAGGTGGTGGTTACCCTCAACAATTTACGGCAAATAGTGGAGCCATTGATCCTACCCGATTCCAACAGGGTTATCAGGCTTCTCAGGAATGGATGTGGAAGAACAAGCCAACAGGTCTTGATCTCAAATTTTCTCCGGGGCTTGATTTGAAATTGGGAAATTCAGGAGATCAGGTATAG 1704 45.19 MLCVPLVSFGAVEYKLFVGSLNKQTTEKEVEEIFSPYGRVEDVYLMRDEFKHSRAIKGLSGIYTMRGCDQPLIVRFADPKRPRPGDLRGPSVGGLGFGPRFEAPGARPMLNYGEPMGDQNPPSSWHLISPPALKTSLNAGVRRFEGQLPPRSGDTAPTLNLQQVHFYDILLLFIAVISFPFAIIFTYGIPQSGVGGIPFSYRAIPQVPPGGQQVSPLQNPIQSPQNMGSSFQLNPQAPSTYSQTQTSLTAIGQFIQPHNPLSSGQPLFNQPMVPQNRLGLSAPLSINLQQPPSVGPLSNQLQQMVQPPQHSPSQLAQMLSQQTQTLKASFQSSQQTFSQLQQQLQSMQPTNQGLASQPNSKATKQQPPWAGNMPHAVSSTVPTTTTEVPPSTSGLTATPQTVAPVKCNWTEHTSPDDYKYYYNSMTGESRWEKPEEFLLFEQKQQKPLAQQPLVPLQTQVPSAQQPPQNQLAQLQVQHQLHFRQHQQLQQPSLSPLASGGPAAHQNRQEGGGYPQQFTANSGAIDPTRFQQGYQASQEWMWKNKPTGLDLKFSPGLDLKLGNSGDQV 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4016550 4021523 + Conep15aG0073500.1 Cone15ag0721 453849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0721 567 SUPERFAMILY WW domain 399 437 IPR036020 GO:0005515(InterPro)
Cone15ag0721 567 SMART ww_5 404 436 IPR001202 GO:0005515(InterPro)
Cone15ag0721 567 Pfam WW domain 407 434 IPR001202 GO:0005515(InterPro)
Cone15ag0721 567 MobiDBLite consensus disorder prediction 286 321 - -
Cone15ag0721 567 MobiDBLite consensus disorder prediction 478 538 - -
Cone15ag0721 567 Pfam RNA recognition motif 16 54 IPR000504 GO:0003723(InterPro)
Cone15ag0721 567 Gene3D - 405 449 - -
Cone15ag0721 567 MobiDBLite consensus disorder prediction 478 501 - -
Cone15ag0721 567 MobiDBLite consensus disorder prediction 548 567 - -
Cone15ag0721 567 MobiDBLite consensus disorder prediction 337 399 - -
Cone15ag0721 567 ProSiteProfiles WW/rsp5/WWP domain profile. 403 436 IPR001202 GO:0005515(InterPro)
Cone15ag0721 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 62 IPR000504 GO:0003723(InterPro)
Cone15ag0721 567 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 13 365 IPR050441 GO:0003723(PANTHER)|GO:0005681(PANTHER)|GO:0048026(PANTHER)
Cone15ag0721 567 MobiDBLite consensus disorder prediction 509 538 - -
Cone15ag0721 567 CDD WW 406 436 IPR001202 GO:0005515(InterPro)
Cone15ag0721 567 Gene3D - 11 84 IPR012677 -
Cone15ag0721 567 SMART rrm1_1 15 75 IPR000504 GO:0003723(InterPro)
Cone15ag0721 567 SUPERFAMILY RNA-binding domain, RBD 14 97 IPR035979 GO:0003676(InterPro)
Cone15ag0721 567 ProSitePatterns WW/rsp5/WWP domain signature. 409 434 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0721 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0721 Cone-Chr15:4016550 Cone17ag0471 Cone-Chr17:2261600 8.21E-08 dispersed
Cone14ag0707 Cone-Chr14:3831628 Cone15ag0721 Cone-Chr15:4016550 2.10E-263 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37