Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0722 ATGGAGAAGAAGATCAAAGAAGAAGAGCTCATGAACATCACTACAGCTACAACTACAAGCTCTTATTCTCCCACTAATCCCATTATGATGTTCTCCGACCATGATTTTCCGACAGGAATCTATTACGACATGTCGTCTCACAACATGTATAATCATCATCCGAAAGATCAGAAAGCATCATCATCCTCTAATTATTTAGGGTTCGTGGATTTGTTGGGCATACAAGATTACACTCCATCTTTATTCGATGTGTTTTCGACTTCTACTATTGCTACTTCTACTACTACATCTTCTACTTCAACTTCTTCTCTGCTTCCGCTGCCGCCTCAGATTATGGCAACGGCAGTTCAGCCACAACTTCTTTCTCCGGCTTCCACGATGATGTCAGCTGATTCGGCGGAGGTGTTGAATGCTCCGGCCACTCCTAACTCTTCCTCGATCTCTTGGTCCTCAAATGAAGCAGCAAATACTAATAATGATCATCGTCAAGTACTTGTTAAGGGTGACGGGCACGATGATAATGATCATATCCATGATCTTGAAGTGGAATATGAGACCGATCAAGAAAAAAATAAGAAATTATTGAAACTGAAAAAGAAGAACCAGAAAAGGCAAAGAGAGCCGAGATTTGCTTTCATGACAAAGAGTGAGGTTGACCATCTAGACGACGGCTATAGATGGAGAAAGTACGGCCAAAAGGCTGTTAAAAACAGCCCTTTTCCCAGGAGTTATTATCGTTGCACGACGGCGGGTTGTGGAGTGAAAAAACGAGTGGAGAGATCATCGGACGATTCCTCGATTGTCGTGACAACATATGAAGGACAACACAAGCATCCGAGCCCAGTAACTCCTCGAGGAAGCCTCCAGATCATGCCCGATTCCACGAATTTGGCAAACAACATTGTTTTCCCACAACCTCAGTATCATCAACAGCAACAACAAGAAGCTTACAGTAAAATGCTAAATAGCTCCTCACCATCACAACAACTACCTTGTTTCGATACTATTAGGTGCTCATCAATCCCTACTAGGTTTAGTAATCCAAGTTTTAAAGCTAGTCATCATGATCATTCTATACAAGATTTTTGTGATCATGAGCGTCCTAATTTTAGGGCACCTTCTTCTTCTTCTAATTTGGCTTCTAATAACTTGCTTACAAGAGACCATGGGCTCCTTGAAGACATTGTGCCATCACGGATGATAAGTAGGAAGGAGCCTAAAGACGAGTCCAAAATGATAATATTCTGA 1248 41.83 MEKKIKEEELMNITTATTTSSYSPTNPIMMFSDHDFPTGIYYDMSSHNMYNHHPKDQKASSSSNYLGFVDLLGIQDYTPSLFDVFSTSTIATSTTTSSTSTSSLLPLPPQIMATAVQPQLLSPASTMMSADSAEVLNAPATPNSSSISWSSNEAANTNNDHRQVLVKGDGHDDNDHIHDLEVEYETDQEKNKKLLKLKKKNQKRQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTTAGCGVKKRVERSSDDSSIVVTTYEGQHKHPSPVTPRGSLQIMPDSTNLANNIVFPQPQYHQQQQQEAYSKMLNSSSPSQQLPCFDTIRCSSIPTRFSNPSFKASHHDHSIQDFCDHERPNFRAPSSSSNLASNNLLTRDHGLLEDIVPSRMISRKEPKDESKMIIF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4027841 4030111 - Conep15aG0073600.1 Cone15ag0722 453850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0722 415 ProSiteProfiles WRKY domain profile. 216 281 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0722 415 Coils Coil 177 197 - -
Cone15ag0722 415 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 289 IPR044810 GO:0003700(InterPro)
Cone15ag0722 415 FunFam WRKY transcription factor 57 207 281 - -
Cone15ag0722 415 Gene3D WRKY domain 206 282 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0722 415 SMART WRKY_cls 221 280 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0722 415 Pfam WRKY DNA -binding domain 222 279 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0722 415 SUPERFAMILY WRKY DNA-binding domain 213 281 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0722 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0722 Cone-Chr15:4027841 Cone18ag0755 Cone-Chr18:4193975 5.52E-42 dispersed
Cone1ag0248 Cone-Chr1:1653400 Cone15ag0722 Cone-Chr15:4027841 9.60E-36 wgd
Cone14ag0709 Cone-Chr14:3846357 Cone15ag0722 Cone-Chr15:4027841 4.07E-173 wgd
Cone15ag0722 Cone-Chr15:4027841 Cone17ag0402 Cone-Chr17:1912244 8.64E-43 wgd
Cone15ag0722 Cone-Chr15:4027841 Cone20ag1011 Cone-Chr20:7094584 4.19E-43 wgd
Cone15ag0722 Cone-Chr15:4027841 Cone4ag0098 Cone-Chr4:473724 9.03E-48 wgd
Cone15ag0722 Cone-Chr15:4027841 Cone7ag0070 Cone-Chr7:297307 3.32E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g48 . . Bda03g01188 . Bpe04g01122 Bpe14g01092 . . . Cmo17g00367 Cma06g01571 Cma14g01581 Car06g01335 Car14g01391 Sed02g1129 Cpe08g00144 Cpe03g01319 Bhi01g01100 Tan10g1087 Cmetu06g2518 Lac11g0974 Hepe05g1368 . Lcy11g1329 Cla06g00419 Cam06g0441 Cec06g0447 Cco06g0446 Clacu06g0428 Cmu06g0427 Cre06g1206 . Cone15ag0722 . Cone4ag0098 Lsi05g01411 Csa06g01861 . Cme06g00800 Blo02g00473 Blo07g00133 Bda11g00494 Bda13g00224 . Bpe13g00706 Bma02g00935 Bma06g01458 . Cmo06g01565 Cmo14g01612 . Cma17g00379 . Car17g00350 Cpe12g00331 . . . . . . . . Cla05g00716 Cam05g0783 Cec05g0789 Cco05g0785 Clacu05g0773 Cmu05g0738 Cre05g0812 . Csa03g01529 Chy06g00766 Cme11g02090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44874 PF05498 RALF 4.50E-18 No_clan Cone TF