Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0728 ATGGAAACTCCACCGGCAGAGGAGCTCCTGAAGAAGATCCAAGAGCTGGAAGCAGGTCACGCTCATCTCAAGCAAGAGATGACGAAGCTAATGCTATCAGGCGGCGGCGCTGCAACGGACTCCATGACCGACCGGCAACCTCACCATCACCATAACCAGCACCACCACCACCACCACCATAGGTCGCAATCAATTTCACCTCAACGCTCAAGTTTGGCTGCGTCGAGGAGGAAGAGTGGCGGATTAGAAGGAGCTACTGCTGCGGCGGCGTGGAAGAAAGGCTCAACTTCATTTCGACATTCTTCTCCGCTTCAGAGAGAGAGTCGGAGCCACGATCCTTCAAATCCTTCAAATGTCGGGGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGTGGTGGGGGTGATTGTAATCCTTCGGCCGTGAATCTTACTGACAAGCAATATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATATTTGATCTTACTGGCCGTATAATTTACTGGAACCGAACTGCTCAAAAAACATATGGTTATTCTGCAGCAGAGGCTCTTGGCCAGGATGCTTTTCAGCTTCTGTTAGATCCTGGAGACCATGGCATTGCAAGTGATCTAATAAGTCAGGTTACAATGGGGGAGAGCTGGACAGGGCAGTTCCCAGTCAAGCATAAAACGGGCGATAGATTTTTAGTTGTTGCAACCGACACTCCCTTCTATGATGATGATGGTACTTTGATTGGAATCATCTGTGTTTCGAGCGATTCACAGCCCTATCAAGAAATGAGGGCTGCATTGTCAAGTGGTAAGAACCCAGAACCATGTTCGACTTCTGGCCGGTCTACTAGTGTTACGACTAAACTTGGTCTTGATCCTCAACAGCCTCTGCAAGTTGCAATTGCCTCGAAAATATCAAATTTGGCCTCTAGGGTAAGCAACAAAGTTAAGTCAAGGATTCGAACTGGAGAAAATAGCTTTGATCATGACGGTGGAAGTTGGGACAGTCATCATTCTGAGCATGGCTTTTCAGATGCAGTTCTATCTGATCATAGGGAGGATGCGACTTCAAGTGGAGCTAGCACTCCAAGAGGAGATATACTCCCTTCTCCTTTTGGTGTTTTTTCAAATATTGATGAAAAATCCCCTGGAAAAATTTTCCGGGATTCTGGTGATGAGGCTGAAGGAAGGACTGCAATCCACAAAATCATAAGTTCAAAGGCAGAAGCATGGATTAGTAAGAAAGGCTTATCATGGCCATGGAAAGGGAACGAGCGAGAAGGGTCAGAGGTAAGGACTGCTCGGTTTCTCTGGCCTTGGCTGCATAATGATCAAGAGATGGAGTCAATTAATCAAAGGAGTTCCTCTTTGGGAACGAGTTCCATGAGGCCTGAAATGCAAGCTAATGAAAGCAATAGACCCGTAAATGAGGCATCTGGATCTTGGTCTTCGTTTAATGTTAACAGCACAAGTAGTGCTAGTAGCTGTGGAAGTACAACCAGTAGCACTGCTAACAAGGTCGACATGGACACAGACTACTTAGATTATGAAATCTTGTGGGAAGACTTGACGATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGGTTTGTGGAATGGATCGGATGTTGCTGTCAAAGTATTTTCCAGACAAGAATATTCGGACGATACGATACTCTCTTTCAGACAGGAGGTATCTCTTATGAAAAAACTCCGCCACCCAAATATTTTGCTTTTCATGGGAGTTGTAACTTCCCCTCAGCGTCTATGCATCGTTACGGAGTTCCTTCCTCGTGGGAGTTTGTTCCGTTTACTACAAAGGAACACTACCAAACTAGATTGGAGACGGCGAATTCATATGGCTTTGGATATTGCACGGGGAATGAATTATCTTCACCGTTGCAATCTGCCTATCATTCATCGAGATTTGAAGTCCTCAAATCTCCTAGTTGACAGAAATTGGACGGTTAAGGTTGGAGATTTTGGTCTATCTCGTCTCAAGCATGACACGTTTCTCACAACCAAGACTGGGAAGGGAACGCCTCAGTGGATGGCACCTGAAGTTCTTCGAAATGAACCCTCAGATGAGAAGTCCGACATATATAGCTTCGGAGTCATATTGTGGGAGCTTGCCACTGAGAAGATCCCTTGGGATAATCTCAATTCTATGCAGGTGATTGGTGCTGTTGGGTTTATGGACCAACGGCTTGAAATCCCCAAGGACACGGATCCACAGTGGGTTGCTATAATCGAGAGCTGCTGGCACAGTGAGCCCTCACGCAGGCCAACATTCCAGGAATTGATAGAAAAGCTTAGAGAGTTGCAGAGGCAGCACACGATTCAGTTACAAGCCGCTCGCTCCGGTGCAGGAGATACCAGCTCTCAAAGGGAATTGTAG 2409 46.49 METPPAEELLKKIQELEAGHAHLKQEMTKLMLSGGGAATDSMTDRQPHHHHNQHHHHHHHRSQSISPQRSSLAASRRKSGGLEGATAAAAWKKGSTSFRHSSPLQRESRSHDPSNPSNVGGGGEGGGGGGGGGGDCNPSAVNLTDKQYLNILQSMGQSVHIFDLTGRIIYWNRTAQKTYGYSAAEALGQDAFQLLLDPGDHGIASDLISQVTMGESWTGQFPVKHKTGDRFLVVATDTPFYDDDGTLIGIICVSSDSQPYQEMRAALSSGKNPEPCSTSGRSTSVTTKLGLDPQQPLQVAIASKISNLASRVSNKVKSRIRTGENSFDHDGGSWDSHHSEHGFSDAVLSDHREDATSSGASTPRGDILPSPFGVFSNIDEKSPGKIFRDSGDEAEGRTAIHKIISSKAEAWISKKGLSWPWKGNEREGSEVRTARFLWPWLHNDQEMESINQRSSSLGTSSMRPEMQANESNRPVNEASGSWSSFNVNSTSSASSCGSTTSSTANKVDMDTDYLDYEILWEDLTIGEQIGQGSCGTVYHGLWNGSDVAVKVFSRQEYSDDTILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTTKLDWRRRIHMALDIARGMNYLHRCNLPIIHRDLKSSNLLVDRNWTVKVGDFGLSRLKHDTFLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWDNLNSMQVIGAVGFMDQRLEIPKDTDPQWVAIIESCWHSEPSRRPTFQELIEKLRELQRQHTIQLQAARSGAGDTSSQREL 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4150184 4156540 - Conep15aG0074300.1 Cone15ag0728 453856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0728 802 SUPERFAMILY PYP-like sensor domain (PAS domain) 150 253 IPR035965 -
Cone15ag0728 802 Gene3D Transferase(Phosphotransferase) domain 1 601 801 - -
Cone15ag0728 802 MobiDBLite consensus disorder prediction 322 342 - -
Cone15ag0728 802 CDD STKc_MAP3K-like 529 775 - -
Cone15ag0728 802 MobiDBLite consensus disorder prediction 95 117 - -
Cone15ag0728 802 PRINTS Tyrosine kinase catalytic domain signature 597 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 PRINTS Tyrosine kinase catalytic domain signature 702 724 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 PRINTS Tyrosine kinase catalytic domain signature 683 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 PRINTS Tyrosine kinase catalytic domain signature 636 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 PRINTS Tyrosine kinase catalytic domain signature 746 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 CDD PAS 155 256 IPR000014 -
Cone15ag0728 802 Gene3D PAS domain 156 262 - -
Cone15ag0728 802 MobiDBLite consensus disorder prediction 48 64 - -
Cone15ag0728 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 Gene3D Phosphorylase Kinase; domain 1 516 600 - -
Cone15ag0728 802 Coils Coil 6 26 - -
Cone15ag0728 802 FunFam PAS domain-containing protein tyrosine kinase family protein 601 792 - -
Cone15ag0728 802 MobiDBLite consensus disorder prediction 350 369 - -
Cone15ag0728 802 ProSiteProfiles PAS repeat profile. 144 215 IPR000014 -
Cone15ag0728 802 FunFam PAS domain-containing protein tyrosine kinase 516 600 - -
Cone15ag0728 802 ProSiteProfiles PAC domain profile. 217 269 IPR000700 -
Cone15ag0728 802 SUPERFAMILY Protein kinase-like (PK-like) 503 774 IPR011009 -
Cone15ag0728 802 SMART pas_2 146 213 IPR000014 -
Cone15ag0728 802 MobiDBLite consensus disorder prediction 263 291 - -
Cone15ag0728 802 ProSiteProfiles Protein kinase domain profile. 523 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 Pfam Protein tyrosine and serine/threonine kinase 523 775 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 Pfam PAS fold 147 254 IPR013767 GO:0006355(InterPro)
Cone15ag0728 802 MobiDBLite consensus disorder prediction 27 138 - -
Cone15ag0728 802 SMART serkin_6 523 779 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0728 802 NCBIfam PAS domain S-box protein 146 264 IPR000014 -
Cone15ag0728 802 PANTHER SERINE-THREONINE PROTEIN KINASE 95 778 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone15ag0728 802 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0728 Cone-Chr15:4150184 Cone8ag0327 Cone-Chr8:1876727 7.91E-128 dispersed
Cone8ag0943 Cone-Chr8:9024987 Cone15ag0728 Cone-Chr15:4150184 9.29E-44 dispersed
Cone1ag0233 Cone-Chr1:1509819 Cone15ag0728 Cone-Chr15:4150184 1.15E-36 wgd
Cone14ag0716 Cone-Chr14:3916480 Cone15ag0728 Cone-Chr15:4150184 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82149 PF07714 PK_Tyr_Ser-Thr 6.60E-47 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0728 - - - 0.0