Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0729 ATGGCGTCTGGTAGCAGAAATCAACCACAAGCACAATCGTCGAACACGAGCAGAAGCAACACGAGAGCTCAGAACCACACAGAATCAGTCAGCAAAGCAATTGCTCAGTACACGGTCGATGCTCGTCTCCACGCAGTTTTCGAGCAGTCTGGAGAATCAGGTAAGTCTTTCGATTACTCCCAATCTGTACGAACCGCCACTCAATCGATCCCTGAACAGCAAATGACTGCGTATTTGTCCAAAATACAAAGAGGAGGCCATATTCAACCTTTCGGTTGCATGATAGCCGTAGATGAGCCCACTTTTGGAGTGATTGGTTTCAGTGAAAACGCACGAGAAATGCTAGGGATTACTCCACAGTCAGTTCCGAGTCTAGAAAAGCCTGAGATCCTCACAATTGGGACCGACGTACGGACATTATTCACTCCCTCAAGTGCGATTCTGCTTGAGAAGGCTTTTGGGGCCAGGGAAATTTCCTTGTTAAATCCTGTCTGGATTCATTCTAAGAATTCAGGAAAGCCTTTTTATGCGATTTTGCACAGGATTGATGTGGGGATTGTGATTGATTTAGAACCTGCTAGGACAGAAGACCCTGCTCTGTCAATAGCTGGGGCAGTACAGTCTCAGAAGCTAGCTGTTAGAGCTATTTCTCAATTACAATCACTCCCAGGTGGAGATATTAAGCTCTTGTGTAATACTGTGGTTGAAAGTGTAAGAGAGCTTACGGGTTATGATAGGGTTATGGTCTATAAATTTCACGAGGATGAACATGGTGAAGTTGTAGCGGAGAGTAAGAGAGCTGACTTGGAACCGTATATCGGATTGCACTATCCCGCGACTGATATCCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGAGTTAGGATGATTGTTGATTGTCATGCTACACCTGTTGGGATAGTTCAACATGAAGAGCTTTTGCAACCTCTCTGCTTGGTTGGTTCAACCCTTAGAGCTCCTCATGGTTGTCATGCTCAATATATGGCCAATATGGGTTCCATTGCATCTTTAGCAATGGCAGTTATTATTAATGGCACGGACGAGGAATCAACAGGAGGTGCAAGGTACTCAATGAGGCTATGGGGTTTGGTTGTCTGCCATCACACATCAGCTCGGTGCATTCCTTTCCCTTTGCGTTATGCTTGTGAGTTCTTAATGCAGGCCCTTGGACTTCAATTAAATATGGAATTGCAGTTGGCTGCTCAATTGTCTGAAAAGCATGTTTTAAGGACCCAAACGCTCTTATGTGACATGATTCTTCGGGATTCTCCAACTGGAATTGTTACTCAGAGTCCGAGTATTATGGATCTTGTGAAATGTGATGGGGCGGCTCTTTACTACCAAGGGAAGTATTACCCACTTGGTGTGACCCCAACTGAAGCCCAAATAAAGGATATCGTGATGTGGTTGTTAGCTTGTCATGGAGACTCAACCGGTTTAAGCACGGACAGTTTGGGTGATGCAGGATATCCTGGGGCAGCATTGCTTGGGGATGAGGTTTCCGGTATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTATTCTGGTTCCGATCTCACACGGCTAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCAGAGGATAAGGATGATGGTCAGAGAATGCATCCACGTTCTTCGTTTAAGGCGTTTTTGGAAGTGGTAAAGAGCCGGAGTTTGCCATGGGAGAATTCTGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTGCGAGATTCTTTTAGAGACGCCGAGGCAAGTAACTCTAGAGCGGTTGTGAATGCTCAAAGTGGTACTGATCTGACGATGCAAGGGCTGGATGAGTTGAGCTCGGTTGCAAGAGAAATGGTAAGGTTGATAGAGACTGCAACTGCTCCAATATTTTCTGTAGATGTTGAAGGCCATATAAATGGATGGAATGCCAAGGTTGCGGAGCTGACAGGGCTTCCTGTTGAGGAAGCAATGGGAAAATCCTTGGTTCATGATCTTATTTATAAAGAATCTGAAGAAAAGGTTGAAAAACTTCTCTTTAATGCTCTAAGAGGTGAAGAAGATAAGAATGTGGAGATAAAGTTGAAAACATTTGGCCCAGAGGAGGAGAAGAAGCCTGTTTTTGTGGTGGTCAATGCTTGCTATAGCAAGGACTACACAAATAATATAGTCGGAGTCTGTTTTGTGGGTCAGGATGTTACCATCCAAAAAGTGGTCATGGACAAATTTATCCACATACAAAGTGATTACAAGGCCATTGTTCATAGTCCAAATCCTTTGATCCCTCCCATATTTGCTTCAGATGATAGCACTTGTTGCTTGGAGTGGAACACTGCCATGGAAAAACTCACTGGATGGTCCAGAAGTGATGTCATCGGGAAAATGTTGGTTGGAGAGGTTTTTGGTGGCTATTGTCGGCTCAAGGGCCCGGATGCACTGACAAAATTCATGATTGTCTTACATAGTGTTATTGCAGGGCAAGATAAAGACAAATTTCCTTTTTCCTTTTACAGAAAGGATGGGAAATATGTACAAGCTCTTTTGACTGCAAACAAGAGGGTGAGTATGGAGGGCCAAAATGTTGGGGCCTTCTGCTTCTTGCAAATTGCTAGCCCTGAACTGCAACAAGCTCTTGAAGTACAGAGGTTGCAGGAGAAGAAATGCTTGGCTAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATGAAGAATCCTTTAAGTGGTATACGCTTTACCAATTCTCTTTTGGAGGCTATGGAGTTGACTGAAGATCAAAAACAGTTTCTCGAGACTAGTGTTGCCTGTGTGAAACAGATGTCAAAGATTATTAAAGATGTAGTTCATTGGAGCTTGAGAAAGCAGAATTTTTACTTGGGAGCGTCATCGATGCTGTTGTTAGCCAAGTAA 2925 43.86 MASGSRNQPQAQSSNTSRSNTRAQNHTESVSKAIAQYTVDARLHAVFEQSGESGKSFDYSQSVRTATQSIPEQQMTAYLSKIQRGGHIQPFGCMIAVDEPTFGVIGFSENAREMLGITPQSVPSLEKPEILTIGTDVRTLFTPSSAILLEKAFGAREISLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCNTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVGIVQHEELLQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGTDEESTGGARYSMRLWGLVVCHHTSARCIPFPLRYACEFLMQALGLQLNMELQLAAQLSEKHVLRTQTLLCDMILRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVMWLLACHGDSTGLSTDSLGDAGYPGAALLGDEVSGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENSEMDAIHSLQLILRDSFRDAEASNSRAVVNAQSGTDLTMQGLDELSSVAREMVRLIETATAPIFSVDVEGHINGWNAKVAELTGLPVEEAMGKSLVHDLIYKESEEKVEKLLFNALRGEEDKNVEIKLKTFGPEEEKKPVFVVVNACYSKDYTNNIVGVCFVGQDVTIQKVVMDKFIHIQSDYKAIVHSPNPLIPPIFASDDSTCCLEWNTAMEKLTGWSRSDVIGKMLVGEVFGGYCRLKGPDALTKFMIVLHSVIAGQDKDKFPFSFYRKDGKYVQALLTANKRVSMEGQNVGAFCFLQIASPELQQALEVQRLQEKKCLARMKELAYICQEMKNPLSGIRFTNSLLEAMELTEDQKQFLETSVACVKQMSKIIKDVVHWSLRKQNFYLGASSMLLLAK 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4161999 4167730 - Conep15aG0074400.1 Cone15ag0729 453857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0729 974 Gene3D PAS domain 619 743 - -
Cone15ag0729 974 FunFam Phytochrome 768 876 - -
Cone15ag0729 974 Gene3D - 410 583 IPR043150 -
Cone15ag0729 974 CDD HisKA 896 956 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 Pfam PAS fold 755 874 IPR013767 GO:0006355(InterPro)
Cone15ag0729 974 Pfam PAS fold 624 739 IPR013767 GO:0006355(InterPro)
Cone15ag0729 974 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cone15ag0729 974 Gene3D PAS domain 81 329 - -
Cone15ag0729 974 SMART HisKA_10 896 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY GAF domain-like 413 590 - -
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 871 IPR035965 -
Cone15ag0729 974 CDD PAS 766 874 IPR000014 -
Cone15ag0729 974 CDD PAS 632 739 IPR000014 -
Cone15ag0729 974 Pfam GAF domain 227 405 IPR003018 GO:0005515(InterPro)
Cone15ag0729 974 NCBIfam PAS domain S-box protein 628 740 IPR000014 -
Cone15ag0729 974 Pfam Phytochrome region 418 591 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 Gene3D - 877 957 - -
Cone15ag0729 974 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 395 IPR016132 -
Cone15ag0729 974 MobiDBLite consensus disorder prediction 1 30 - -
Cone15ag0729 974 FunFam Phytochrome 877 957 - -
Cone15ag0729 974 FunFam Phytochrome 617 749 - -
Cone15ag0729 974 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 893 956 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY GAF domain-like 206 402 - -
Cone15ag0729 974 Gene3D - 207 566 IPR029016 -
Cone15ag0729 974 SMART pas_2 754 824 IPR000014 -
Cone15ag0729 974 SMART pas_2 623 690 IPR000014 -
Cone15ag0729 974 FunFam Phytochrome 410 540 - -
Cone15ag0729 974 Pfam His Kinase A (phospho-acceptor) domain 897 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Cone15ag0729 974 Gene3D PAS domain 768 876 - -
Cone15ag0729 974 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 520 539 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 435 455 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 553 571 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PANTHER OS08G0260000 PROTEIN 16 711 - -
Cone15ag0729 974 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
Cone15ag0729 974 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Cone15ag0729 974 Pfam PAS fold 77 193 IPR013654 GO:0006355(InterPro)
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Cone15ag0729 974 SMART gaf_1 226 415 IPR003018 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0729 K12121 - - vvi:100261882 1638.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0729 Cone-Chr15:4161999 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone14ag0717 Cone-Chr14:3926212 Cone15ag0729 Cone-Chr15:4161999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42