Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0729 ATGGCGTCTGGTAGCAGAAATCAACCACAAGCACAATCGTCGAACACGAGCAGAAGCAACACGAGAGCTCAGAACCACACAGAATCAGTCAGCAAAGCAATTGCTCAGTACACGGTCGATGCTCGTCTCCACGCAGTTTTCGAGCAGTCTGGAGAATCAGGTAAGTCTTTCGATTACTCCCAATCTGTACGAACCGCCACTCAATCGATCCCTGAACAGCAAATGACTGCGTATTTGTCCAAAATACAAAGAGGAGGCCATATTCAACCTTTCGGTTGCATGATAGCCGTAGATGAGCCCACTTTTGGAGTGATTGGTTTCAGTGAAAACGCACGAGAAATGCTAGGGATTACTCCACAGTCAGTTCCGAGTCTAGAAAAGCCTGAGATCCTCACAATTGGGACCGACGTACGGACATTATTCACTCCCTCAAGTGCGATTCTGCTTGAGAAGGCTTTTGGGGCCAGGGAAATTTCCTTGTTAAATCCTGTCTGGATTCATTCTAAGAATTCAGGAAAGCCTTTTTATGCGATTTTGCACAGGATTGATGTGGGGATTGTGATTGATTTAGAACCTGCTAGGACAGAAGACCCTGCTCTGTCAATAGCTGGGGCAGTACAGTCTCAGAAGCTAGCTGTTAGAGCTATTTCTCAATTACAATCACTCCCAGGTGGAGATATTAAGCTCTTGTGTAATACTGTGGTTGAAAGTGTAAGAGAGCTTACGGGTTATGATAGGGTTATGGTCTATAAATTTCACGAGGATGAACATGGTGAAGTTGTAGCGGAGAGTAAGAGAGCTGACTTGGAACCGTATATCGGATTGCACTATCCCGCGACTGATATCCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGAGTTAGGATGATTGTTGATTGTCATGCTACACCTGTTGGGATAGTTCAACATGAAGAGCTTTTGCAACCTCTCTGCTTGGTTGGTTCAACCCTTAGAGCTCCTCATGGTTGTCATGCTCAATATATGGCCAATATGGGTTCCATTGCATCTTTAGCAATGGCAGTTATTATTAATGGCACGGACGAGGAATCAACAGGAGGTGCAAGGTACTCAATGAGGCTATGGGGTTTGGTTGTCTGCCATCACACATCAGCTCGGTGCATTCCTTTCCCTTTGCGTTATGCTTGTGAGTTCTTAATGCAGGCCCTTGGACTTCAATTAAATATGGAATTGCAGTTGGCTGCTCAATTGTCTGAAAAGCATGTTTTAAGGACCCAAACGCTCTTATGTGACATGATTCTTCGGGATTCTCCAACTGGAATTGTTACTCAGAGTCCGAGTATTATGGATCTTGTGAAATGTGATGGGGCGGCTCTTTACTACCAAGGGAAGTATTACCCACTTGGTGTGACCCCAACTGAAGCCCAAATAAAGGATATCGTGATGTGGTTGTTAGCTTGTCATGGAGACTCAACCGGTTTAAGCACGGACAGTTTGGGTGATGCAGGATATCCTGGGGCAGCATTGCTTGGGGATGAGGTTTCCGGTATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTATTCTGGTTCCGATCTCACACGGCTAAAGAGATCAAGTGGGGTGGAGCAAAGCATCATCCAGAGGATAAGGATGATGGTCAGAGAATGCATCCACGTTCTTCGTTTAAGGCGTTTTTGGAAGTGGTAAAGAGCCGGAGTTTGCCATGGGAGAATTCTGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTGCGAGATTCTTTTAGAGACGCCGAGGCAAGTAACTCTAGAGCGGTTGTGAATGCTCAAAGTGGTACTGATCTGACGATGCAAGGGCTGGATGAGTTGAGCTCGGTTGCAAGAGAAATGGTAAGGTTGATAGAGACTGCAACTGCTCCAATATTTTCTGTAGATGTTGAAGGCCATATAAATGGATGGAATGCCAAGGTTGCGGAGCTGACAGGGCTTCCTGTTGAGGAAGCAATGGGAAAATCCTTGGTTCATGATCTTATTTATAAAGAATCTGAAGAAAAGGTTGAAAAACTTCTCTTTAATGCTCTAAGAGGTGAAGAAGATAAGAATGTGGAGATAAAGTTGAAAACATTTGGCCCAGAGGAGGAGAAGAAGCCTGTTTTTGTGGTGGTCAATGCTTGCTATAGCAAGGACTACACAAATAATATAGTCGGAGTCTGTTTTGTGGGTCAGGATGTTACCATCCAAAAAGTGGTCATGGACAAATTTATCCACATACAAAGTGATTACAAGGCCATTGTTCATAGTCCAAATCCTTTGATCCCTCCCATATTTGCTTCAGATGATAGCACTTGTTGCTTGGAGTGGAACACTGCCATGGAAAAACTCACTGGATGGTCCAGAAGTGATGTCATCGGGAAAATGTTGGTTGGAGAGGTTTTTGGTGGCTATTGTCGGCTCAAGGGCCCGGATGCACTGACAAAATTCATGATTGTCTTACATAGTGTTATTGCAGGGCAAGATAAAGACAAATTTCCTTTTTCCTTTTACAGAAAGGATGGGAAATATGTACAAGCTCTTTTGACTGCAAACAAGAGGGTGAGTATGGAGGGCCAAAATGTTGGGGCCTTCTGCTTCTTGCAAATTGCTAGCCCTGAACTGCAACAAGCTCTTGAAGTACAGAGGTTGCAGGAGAAGAAATGCTTGGCTAGGATGAAAGAGTTGGCTTACATTTGCCAGGAAATGAAGAATCCTTTAAGTGGTATACGCTTTACCAATTCTCTTTTGGAGGCTATGGAGTTGACTGAAGATCAAAAACAGTTTCTCGAGACTAGTGTTGCCTGTGTGAAACAGATGTCAAAGATTATTAAAGATGTAGTTCATTGGAGCTTGAGAAAGCAGAATTTTTACTTGGGAGCGTCATCGATGCTGTTGTTAGCCAAGTAA 2925 43.86 MASGSRNQPQAQSSNTSRSNTRAQNHTESVSKAIAQYTVDARLHAVFEQSGESGKSFDYSQSVRTATQSIPEQQMTAYLSKIQRGGHIQPFGCMIAVDEPTFGVIGFSENAREMLGITPQSVPSLEKPEILTIGTDVRTLFTPSSAILLEKAFGAREISLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCNTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVGIVQHEELLQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGTDEESTGGARYSMRLWGLVVCHHTSARCIPFPLRYACEFLMQALGLQLNMELQLAAQLSEKHVLRTQTLLCDMILRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVMWLLACHGDSTGLSTDSLGDAGYPGAALLGDEVSGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENSEMDAIHSLQLILRDSFRDAEASNSRAVVNAQSGTDLTMQGLDELSSVAREMVRLIETATAPIFSVDVEGHINGWNAKVAELTGLPVEEAMGKSLVHDLIYKESEEKVEKLLFNALRGEEDKNVEIKLKTFGPEEEKKPVFVVVNACYSKDYTNNIVGVCFVGQDVTIQKVVMDKFIHIQSDYKAIVHSPNPLIPPIFASDDSTCCLEWNTAMEKLTGWSRSDVIGKMLVGEVFGGYCRLKGPDALTKFMIVLHSVIAGQDKDKFPFSFYRKDGKYVQALLTANKRVSMEGQNVGAFCFLQIASPELQQALEVQRLQEKKCLARMKELAYICQEMKNPLSGIRFTNSLLEAMELTEDQKQFLETSVACVKQMSKIIKDVVHWSLRKQNFYLGASSMLLLAK 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4161999 4167730 - Conep15aG0074400.1 Cone15ag0729 453857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0729 974 Gene3D PAS domain 619 743 - -
Cone15ag0729 974 FunFam Phytochrome 768 876 - -
Cone15ag0729 974 Gene3D - 410 583 IPR043150 -
Cone15ag0729 974 CDD HisKA 896 956 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 Pfam PAS fold 755 874 IPR013767 GO:0006355(InterPro)
Cone15ag0729 974 Pfam PAS fold 624 739 IPR013767 GO:0006355(InterPro)
Cone15ag0729 974 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cone15ag0729 974 Gene3D PAS domain 81 329 - -
Cone15ag0729 974 SMART HisKA_10 896 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY GAF domain-like 413 590 - -
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 769 871 IPR035965 -
Cone15ag0729 974 CDD PAS 766 874 IPR000014 -
Cone15ag0729 974 CDD PAS 632 739 IPR000014 -
Cone15ag0729 974 Pfam GAF domain 227 405 IPR003018 GO:0005515(InterPro)
Cone15ag0729 974 NCBIfam PAS domain S-box protein 628 740 IPR000014 -
Cone15ag0729 974 Pfam Phytochrome region 418 591 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 Gene3D - 877 957 - -
Cone15ag0729 974 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 395 IPR016132 -
Cone15ag0729 974 MobiDBLite consensus disorder prediction 1 30 - -
Cone15ag0729 974 FunFam Phytochrome 877 957 - -
Cone15ag0729 974 FunFam Phytochrome 617 749 - -
Cone15ag0729 974 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 893 956 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY GAF domain-like 206 402 - -
Cone15ag0729 974 Gene3D - 207 566 IPR029016 -
Cone15ag0729 974 SMART pas_2 754 824 IPR000014 -
Cone15ag0729 974 SMART pas_2 623 690 IPR000014 -
Cone15ag0729 974 FunFam Phytochrome 410 540 - -
Cone15ag0729 974 Pfam His Kinase A (phospho-acceptor) domain 897 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Cone15ag0729 974 Gene3D PAS domain 768 876 - -
Cone15ag0729 974 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 520 539 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 737 757 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 624 640 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 643 658 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 435 455 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 553 571 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PRINTS Phytochrome signature 717 734 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone15ag0729 974 PANTHER OS08G0260000 PROTEIN 16 711 - -
Cone15ag0729 974 ProSiteProfiles PAS repeat profile. 621 692 IPR000014 -
Cone15ag0729 974 ProSiteProfiles PAS repeat profile. 755 807 IPR000014 -
Cone15ag0729 974 Pfam PAS fold 77 193 IPR013654 GO:0006355(InterPro)
Cone15ag0729 974 SUPERFAMILY PYP-like sensor domain (PAS domain) 628 736 IPR035965 -
Cone15ag0729 974 SMART gaf_1 226 415 IPR003018 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0729 Cone-Chr15:4161999 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone14ag0717 Cone-Chr14:3926212 Cone15ag0729 Cone-Chr15:4161999 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0729 K12121 - vvi:100261882 1638.62