Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0748 ATGTCTACGGCTAGTTCCTCTGTTTCTATGAAATCCGGAGATGGGGTTTCGGACCAGTTTCCGGCGGGTCTCCGAGTGCTCGTCGTCGATGATGATCCTACCTGCCTTATGATCTTAGAGAAGATGCTTCAAACCTGCCTCTATTATGTCACGAAATGCAATCGAGCCGAGAAGGCCTTATCCATGCTCAGACAGAACAAAAATGGGTTTGATATTGTAATAAGCGATGTTCATATGCCGGACATGGATGGATTCAAACTCCTTGAATACATCGGTCTCGAAATGGATTTGCCGGTTATAATGATGTCGGCCGATGATGGGAAAAACGTAGTGATGAAGGGAGTGACGCATGGGGCTTGTGATTATTTGATCAAGCCGGTTCGGATCGAGGCGTTGAGGAACATATGGCAACATGTTGTTCGGAAAAGAAGGAATGAATGGAAGGAACAAGAACAATCCGGAAGCGTGGAGGAAGGATCAGACCGGCAGCAAAAGTTTTCCGAAGATGGGGGAGATTACTCATCCTCAGCCAATGAAGGGAATTGGAAGAATGCGTCAAAGAAGAGGAATAATGAGGATGAAGAAGAAACAGAGGAAAGGGAGGATGGTTCTACTTTGAAGAAGCCTAGGGTTGTTTGGTCCATTGAGCTTCATCAACAATTTGTAGCAGCCGTTAATCAACTCGGCATTGATAAAGCTGTTCCGAAAAAAATTCTCGAGTTGATGAATGTTCCGGGGCTCACTAGAGAAAATGTTGCAAGCCACCTTCAGAAATACCGGCTCTATCTTAGAAGGCTAAGTGGAGTTGCTCAGCACCCAAGTAATTTGAGTACTTCTTTCATCATGGGTTCTCAAGAAACAACTTTCGGGCCGATGTCGTCTCTAAGTGGGCTTGATCTTCAGACCCTTGCCGCCACGGGTCAATTATCACCCCAAAGCCTTGCTACATTCCAAGCCTCCGGGCTCAGCAGTAGGCCCGGAAAGTCAACGACCTTATCCGGCATGCCACTTGTCGATCATAGGAACATTTTCAGCTTCGAAAATCCAAAACCAAATAGTAAACCTCTAATGAGTTTACTTCATAGTAACTCTGTTCTAATGCAGTCTCAACCGAGTGAAATTAGTAGCAATATTCTCGGGTCGAGGGTTTCTTCATCATCATTGGTTGGGCAATCTATCATTGCAAATGGGTATACCAATGGAGGAGGGGTGAGCTACAATAATAATAATAATAATTTAGTTCAGCCAAGCTCTTCAATGATGAATTTTCCCACCAACCAAACCCAAGAATTGCCTGGAAACAACTTTCTTGTTCAAAGCAAAGGGTCATTTCCGGAAGAGGGTAACTCAGACGTCAAAAGTTCCGGACGATTATTGCCCGTGTATAATATTTATAGCAGCTATTTGGAACAACCAAAATCCCAATATTGGGACATGCAAAATGTTGCCCCCACCTTTAATGGGTCCCAACAAAACGCATACTCTGTTCAAGGTGAGGCTATGTTCTCTTTGGATGAAGTCACGGAGCAAGTGAACACACAAAATATGGGCCAACAACTTAGCTGTGTGCTAGACAATTCAATTAGAGTCAAAGTTGAGAGGATTTACGATGCAGAAAGTCAAACCGGAATCTTTCCCGATCATCTTGGTCAGGAGGATCTTCTTAGTGCCCTTCTCAAACAACAACAGGATGGAGCTGGATGGGTTGAAAGTGAGTTTAGCTTTGATGGGTTTCCGGCCGATAATATTCATGCTTAA 1758 44.2 MSTASSSVSMKSGDGVSDQFPAGLRVLVVDDDPTCLMILEKMLQTCLYYVTKCNRAEKALSMLRQNKNGFDIVISDVHMPDMDGFKLLEYIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALRNIWQHVVRKRRNEWKEQEQSGSVEEGSDRQQKFSEDGGDYSSSANEGNWKNASKKRNNEDEEETEEREDGSTLKKPRVVWSIELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVAQHPSNLSTSFIMGSQETTFGPMSSLSGLDLQTLAATGQLSPQSLATFQASGLSSRPGKSTTLSGMPLVDHRNIFSFENPKPNSKPLMSLLHSNSVLMQSQPSEISSNILGSRVSSSSLVGQSIIANGYTNGGGVSYNNNNNNLVQPSSSMMNFPTNQTQELPGNNFLVQSKGSFPEEGNSDVKSSGRLLPVYNIYSSYLEQPKSQYWDMQNVAPTFNGSQQNAYSVQGEAMFSLDEVTEQVNTQNMGQQLSCVLDNSIRVKVERIYDAESQTGIFPDHLGQEDLLSALLKQQQDGAGWVESEFSFDGFPADNIHA 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4345184 4348650 - Conep15aG0076300.1 Cone15ag0748 453876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0748 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677(InterPro)
Cone15ag0748 585 PIRSF RR_ARR_type-B 5 582 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone15ag0748 585 CDD REC_typeB_ARR-like 26 140 - -
Cone15ag0748 585 Gene3D - 205 267 - -
Cone15ag0748 585 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Cone15ag0748 585 MobiDBLite consensus disorder prediction 146 168 - -
Cone15ag0748 585 MobiDBLite consensus disorder prediction 146 205 - -
Cone15ag0748 585 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
Cone15ag0748 585 FunFam Two-component response regulator 204 267 - -
Cone15ag0748 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 264 IPR017930 -
Cone15ag0748 585 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cone15ag0748 585 SUPERFAMILY CheY-like 23 154 IPR011006 -
Cone15ag0748 585 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cone15ag0748 585 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cone15ag0748 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 368 IPR045279 GO:0009736(InterPro)
Cone15ag0748 585 FunFam Two-component response regulator 24 161 - -
Cone15ag0748 585 Gene3D - 24 162 - -
Cone15ag0748 585 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0734 Cone-Chr13:7048594 Cone15ag0748 Cone-Chr15:4345184 5.85E-109 dispersed
Cone15ag0748 Cone-Chr15:4345184 Cone19ag0738 Cone-Chr19:6052160 7.58E-107 dispersed
Cone14ag0738 Cone-Chr14:4109366 Cone15ag0748 Cone-Chr15:4345184 0 wgd
Cone15ag0748 Cone-Chr15:4345184 Cone4ag0123 Cone-Chr4:575340 9.29E-164 wgd
Cone15ag0748 Cone-Chr15:4345184 Cone7ag0120 Cone-Chr7:505034 3.61E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44876 PF00332 Glyco_hydro_17 6.70E-69 CL0058 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0748 K14491 - rcu:8262611 664.455