Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0754 ATGGTTGATCGGAAGAGGACGATCGCTATCATCGTAGTCTCCTGTCTGATTCTACTAATTGTCGCGGCAACTGCTGTGACTATTGGTATTGTTCTGAAAGGGAAATCCAGAGTGCCTTCTTCTCCACGCGCCAATGTAACTTCAATTTCAACATCGACGAAGTCGATCCAAACAATTTGTCAGCCAGCCGATTACAAGGAAACATGCGAAAAAAGCCTTACGCTGGCAGCAGGAAACGTCACAAGCCCAAGAGAACTTATCAAAGCAGGATTAAACGTTGGGATTGACGAGCTCAATGCAGCGATCGAGAGCTCAACAACATTGGTAGAGCTCGCTAAGGATCCAATGTCAAATCAAGCGCTTCAAAACTGCCGCACGCTGCTTGAGTACTCGATCGAAGATCTCAATAAGTCACTTGAAAAGATCAGCGCCTTTGATATGACTCAGGTCGAAAAATTCGTGCACGACCTTGAGATATGGCTTAGTGCTGCCATAACATATGAGCAAACGTGTTTGGATGGCTTTGAGAACACCACAGACAATACCGGTGAGAAAATGAAGAAAGTCTTGAAGACTGCAATGGAGCTCACAAGCAATGGACTTGCTATGGTGACTGGAATCTCCTCCACGTTAGAATCATTTAAAAATGTCTCCGGCCGAAGGCTCTTATCTAATGATAGAAGTGAGGTGCCGTCATGGTTGAACGATGGAAAGCATAGACTTCTTCAAGCAACTCCCGCCACCATTCGACCCAATGTTGTTGTGGCTAAGGACGGAAGTGGAAAGTACAGGACGATTTGCGAAGCCTTAAACGATGTACCCCAGAAGAACACCAAGCCTTTCGTAATCCATATCAAGGCCGGGGTTTATCAAGAATATGTTATTGTTAACCAGAGCTTGACCCATGTGATGATGATCGGAGATGGCCCAACCAAGACCAAGATCACCGGTAGCAAGAACTACGTTGACGGCATCGCCATATTCAAAACCGCCACAGTTGCCATTATTGGAAGCAACTTCATTGCCAAGGACATGGGGTTTGAGAACACGGCCGGAGCTGTGAAACACCAAGCGGTAGCACTTCGTGTCCAATCTGACATGTCCATCTTCTATAACTGCCAGATGGACGGGTACCAAGACACTCTGTATGCCCATGCTCACCGCCAGTACTATCGTGATTGCACCATCTCAGGAACTATCGACTTCATCTTCGGAAACGCAGCAACCGTGTTCCAGAACTGCAAGATGATCGTGAGAAAGCCATTAGAAAACCAGAATTGCATAGTTACCGCTCATGGAAGGACCGAGAGGCGTGAGCCCACGGCCTTTATCCTCCAAAACTGCACTATCACGGCGGACCCGGAATATTATTCTGTTAGAAACATGAACAAGGCTTATTTGGGCCGCCCATGGAAGGAATATTCTAGAACCATCATCATGCAATCTCAAATTGATGACATGATTCAGCCCAAAGGTTGGATGCCATGGGCTGGTGACTTTGCTCTCAATACTTGCTTCTATGCCGAGTTTGGCAATAGAGGTCCAGGAGCCGTGCAAACCAAAAGAGTTACATGGCGAGGAATCAAGAAAATCGCACCGGAGCAAGCCGTAAAATTCACTCCGGCAATGTTTATTCTTGGAGATTTGTGGATCAAGCAAACCGGAATACCTTATTCTTCTGGGATGATGCAGAACCTTCAAAGAGAAACATATTAG 1716 46.33 MVDRKRTIAIIVVSCLILLIVAATAVTIGIVLKGKSRVPSSPRANVTSISTSTKSIQTICQPADYKETCEKSLTLAAGNVTSPRELIKAGLNVGIDELNAAIESSTTLVELAKDPMSNQALQNCRTLLEYSIEDLNKSLEKISAFDMTQVEKFVHDLEIWLSAAITYEQTCLDGFENTTDNTGEKMKKVLKTAMELTSNGLAMVTGISSTLESFKNVSGRRLLSNDRSEVPSWLNDGKHRLLQATPATIRPNVVVAKDGSGKYRTICEALNDVPQKNTKPFVIHIKAGVYQEYVIVNQSLTHVMMIGDGPTKTKITGSKNYVDGIAIFKTATVAIIGSNFIAKDMGFENTAGAVKHQAVALRVQSDMSIFYNCQMDGYQDTLYAHAHRQYYRDCTISGTIDFIFGNAATVFQNCKMIVRKPLENQNCIVTAHGRTERREPTAFILQNCTITADPEYYSVRNMNKAYLGRPWKEYSRTIIMQSQIDDMIQPKGWMPWAGDFALNTCFYAEFGNRGPGAVQTKRVTWRGIKKIAPEQAVKFTPAMFILGDLWIKQTGIPYSSGMMQNLQRETY 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4429604 4431428 + Conep15aG0076900.1 Cone15ag0754 453882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0754 571 SUPERFAMILY Pectin lyase-like 248 561 IPR011050 -
Cone15ag0754 571 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cone15ag0754 571 PANTHER PECTINESTERASE 8 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone15ag0754 571 ProSitePatterns Pectinesterase signature 1. 277 296 IPR018040 -
Cone15ag0754 571 SMART PMEI_2 51 203 IPR006501 GO:0004857(InterPro)
Cone15ag0754 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 207 IPR035513 -
Cone15ag0754 571 FunFam Pectinesterase 52 208 - -
Cone15ag0754 571 CDD PMEI-like_3 58 209 - -
Cone15ag0754 571 Gene3D - 246 562 IPR012334 -
Cone15ag0754 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cone15ag0754 571 Pfam Pectinesterase 252 548 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone15ag0754 571 NCBIfam pectinesterase inhibitor domain 50 205 IPR006501 GO:0004857(InterPro)
Cone15ag0754 571 FunFam Pectinesterase 246 562 - -
Cone15ag0754 571 Pfam Plant invertase/pectin methylesterase inhibitor 54 203 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0597 Cone-Chr15:3063233 Cone15ag0754 Cone-Chr15:4429604 6.79E-97 dispersed
Cone15ag0754 Cone-Chr15:4429604 Cone4ag0894 Cone-Chr4:6621834 1.45E-139 dispersed
Cone15ag0754 Cone-Chr15:4429604 Cone15ag0755 Cone-Chr15:4437396 1.29E-16 tandem
Cone19ag0584 Cone-Chr19:5157690 Cone15ag0754 Cone-Chr15:4429604 9.36E-134 transposed
Cone14ag0748 Cone-Chr14:4183617 Cone15ag0754 Cone-Chr15:4429604 6.43E-244 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone17ag0452 Cone-Chr17:2131807 2.23E-123 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone20ag0959 Cone-Chr20:6855559 1.26E-107 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone3ag0815 Cone-Chr3:4194970 3.83E-225 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone4ag0137 Cone-Chr4:626754 9.30E-233 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone5ag0054 Cone-Chr5:269828 2.29E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0754 K01051 - csv:101221958 713.761