Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0756 ATGGAAACCCACAACAACGATGTGAATCCGATGCCTCCTCCGACGAGTCATGATTTCAAGAGCTTCGCTCTAAGCGGTAAGATCATGTTAATCGCAATCATCGTTTTACTAATCGTCGTCGTTTTGATGGTCAATCTACACCTCTACGTTCGCTGGTACCTCCTCCGAGCTCGTCGTCGACGTTTCCTCCGGTACCGCCGCCGTAGTCCCCGCCTCGTCCTCTACGCAGACTCCCAAAACGGCGTCGTGGCCGGAAATAGTGTCACTGTCACTGCTCTGACCCACGCACGTGGCCTTGACGTGTCGGTCCTCAAGTCTCTACCCGTTTTCGTTTACTCCGAGAAAACCCACCCGGAATCGGTTGACTGCTCGGTGTGTCTGTCGGAGCTTGAAGAGGGCGAAACGGGTCGGGTTTTACCCAACTGCAAGCATAGCTTTCATACCGAGTGTATCGACTTGTGGTTCAGTTCGCATTCCACGTGCCCGCTTTGTCGATCTCCTGTCGAGCCGGCAGCTGGTTCTGTCGCTGAACCGGGTTCGGGGTCCGGGTGTGCCGTAGAGGCTAGCTCTTCTTCTTCTTCACAAACGTCATCGTTTGGACAAGCTGAGGAGCAGGAGAGCGACACGTCCGCTACTCAGTCTTTTAGTTTTAGATCGCCGATGAGTCGTGTGATGTCGTTGTCGTTTAAGAGGATTCTGAGTAGGGACAATAAACGCGGTAGTGTTTCTTTTTCGGGAAATGTCGTCACATCCGAGTCAGATATTGAAAAAGGACAAAATGAGTTGACTCAGTAG 795 52.2 METHNNDVNPMPPPTSHDFKSFALSGKIMLIAIIVLLIVVVLMVNLHLYVRWYLLRARRRRFLRYRRRSPRLVLYADSQNGVVAGNSVTVTALTHARGLDVSVLKSLPVFVYSEKTHPESVDCSVCLSELEEGETGRVLPNCKHSFHTECIDLWFSSHSTCPLCRSPVEPAAGSVAEPGSGSGCAVEASSSSSSQTSSFGQAEEQESDTSATQSFSFRSPMSRVMSLSFKRILSRDNKRGSVSFSGNVVTSESDIEKGQNELTQ 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4437878 4439113 - Conep15aG0077100.1 Cone15ag0756 453884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0756 264 MobiDBLite consensus disorder prediction 238 264 - -
Cone15ag0756 264 Pfam Ring finger domain 122 165 IPR001841 -
Cone15ag0756 264 SUPERFAMILY RING/U-box 103 171 - -
Cone15ag0756 264 MobiDBLite consensus disorder prediction 184 216 - -
Cone15ag0756 264 FunFam RING-H2 finger protein ATL3 90 170 - -
Cone15ag0756 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 230 - -
Cone15ag0756 264 MobiDBLite consensus disorder prediction 237 264 - -
Cone15ag0756 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 171 IPR013083 -
Cone15ag0756 264 CDD RING-H2_EL5-like 122 165 - -
Cone15ag0756 264 MobiDBLite consensus disorder prediction 175 216 - -
Cone15ag0756 264 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Cone15ag0756 264 SMART ring_2 123 164 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0756 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0756 Cone-Chr15:4437878 Cone7ag0829 Cone-Chr7:6205530 9.97E-32 dispersed
Cone15ag0756 Cone-Chr15:4437878 Cone7ag0133 Cone-Chr7:560866 1.91E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0756 Cone7ag0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005649 5 1 1 3 3 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 39