Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0763 ATGACAGGTCCCACGTTAGAAATGGAGCCAGTAGAGCCACAATCTCTTAAGAAGCTCAGCTTCAAATCACTCAAACGAACCCTTGATCTCTTCTCCCCCGTCCATGGCCAGCTCGCGCCACCAGATTCCGAGAGCAAGGAAATTCGTATGAGCCATAAGATTAATGTTGAGTATGGTGGAATCAAAAGTGCGCCTAGTCAGTCTTCTAGTCGAGCACAGTCTGCTGCAGTGGATCGTGGAACTTCGTCTTCAATGCCTTCAGATATCCTCGCTCTTCCTGGTCTTGAGAATTCTAGGACTGCACAGGAAGTAGTGGCTCAAAATGCTTTGGTTGTTGGCCCAACTGTGCGACCAAGGGCACCGAATGATGTTGGTCTTCAGGGGAGAAGCTCTGCAGTTGTTTCTGCATCTGGATCATCTGAAAGAAATTTCTCAACATCAGCACTTATGGAAAGAATACCAAGCAAATGGCCGCGTCCTGTTTGGCATGCGCCCTGGAAAAACTACAGGGTCATTAGTGGCCACTTGGGATGGGTGAGATCTATTGCATTTGATCCAAGTAATTCATGGTTTTGCACTGGCTCTGCAGATCGGACTATCAAGATTTGGGATGTTGGAACTGGAAGACTAAAACTTACATTAACAGGACATATCGAGCAAGTACGAGGTCTGGCTGTCAGCAGCAGACATACCTACATGTTTTCTGCTGGTGATGATAAACAAGTAAAATGCTGGGACCTAGAGCAGAATAAGGTCATCCGTTCTTATCACGGTCACCTGAGTGGAGTTTACTGCCTGGCTCTTCATCCCACCATCGATATTTTGCTTACTGGGGGACGTGATTCTGTTTGCCGGGTGTGGGATATTCGTAGCAAGATGCAAGCTCATGCACTTTCTGGTCATGACAACACAGTATGCTCGGTTTTTACTCGGCCTACAGATCCACAAGTAGTGACGGGTTCCCACGACACTACCATCAAGTTCTGGGACCTTAGATATGGAAAGACAATGTCAACTCTAACTCACCATAAGAAATCTGTACGAGCAATGGCACTGCATCCTAAAGAGCATTGTTTTGCATCTGCATCAGCTGACAATATTAAGAAATTTAATCTTCCAAGGGGAGAATTCTTACACAATATGCTCTCTCAGCAGAAGACTATCATTAATGCGATGGCTGTCAATGAAGATGGTGTTTTGGCAACTGGAGGTGACAATGGTAGTTTATGGTTCTGGGACTGGAAGAGTGGCCATAACTTTCAACAATCGCAGACAATTGTACAGCCTGGCTCACTGGATAGTGAAGCTGGTATCTATGCTCTCTCCTATGATGTAACCGGTTCGAGACTCATCACTTGTGAAGCTGATAAGACAATAAAAATGTGGAAAGAAGATGAAACTGCTACCCCGGAAACTCACCCCCTCAATTTCAAGCCACCGAAAGATATCAGAAGATTCTAG 1461 45.59 MTGPTLEMEPVEPQSLKKLSFKSLKRTLDLFSPVHGQLAPPDSESKEIRMSHKINVEYGGIKSAPSQSSSRAQSAAVDRGTSSSMPSDILALPGLENSRTAQEVVAQNALVVGPTVRPRAPNDVGLQGRSSAVVSASGSSERNFSTSALMERIPSKWPRPVWHAPWKNYRVISGHLGWVRSIAFDPSNSWFCTGSADRTIKIWDVGTGRLKLTLTGHIEQVRGLAVSSRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQAHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMALHPKEHCFASASADNIKKFNLPRGEFLHNMLSQQKTIINAMAVNEDGVLATGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDVTGSRLITCEADKTIKMWKEDETATPETHPLNFKPPKDIRRF 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4556201 4561539 + Conep15aG0077800.1 Cone15ag0763 453891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0763 486 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 8 479 IPR045241 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)
Cone15ag0763 486 MobiDBLite consensus disorder prediction 61 86 - -
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 251 - -
Cone15ag0763 486 FunFam Putative pleiotropic regulator 1 151 486 - -
Cone15ag0763 486 SMART WD40_4 165 204 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 333 371 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 291 330 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 207 246 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 249 288 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 374 413 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SMART WD40_4 425 463 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Gene3D - 152 486 IPR015943 GO:0005515(InterPro)
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 291 - -
Cone15ag0763 486 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Cone15ag0763 486 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Cone15ag0763 486 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 SUPERFAMILY WD40 repeat-like 161 463 IPR036322 GO:0005515(InterPro)
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 332 - -
Cone15ag0763 486 MobiDBLite consensus disorder prediction 467 486 - -
Cone15ag0763 486 CDD WD40 168 463 - -
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 209 - -
Cone15ag0763 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 MobiDBLite consensus disorder prediction 60 86 - -
Cone15ag0763 486 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Cone15ag0763 486 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 209 246 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 334 366 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 435 462 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 251 288 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 167 204 IPR001680 GO:0005515(InterPro)
Cone15ag0763 486 Pfam WD domain, G-beta repeat 385 413 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0763 K12862 - - vvi:100248018 850.892
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35